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Include webin-cli jar into container, remove ENA_WEBIN_CLI_DOWNLOAD module

enhancementNew feature or requestNew feature or request

Status: Open.

#50 In nf-core/seqsubmit;

· ochkalova opened on Mar 26, 2026

Create citations functions required by template

enhancementNew feature or requestNew feature or request

Status: Open.

#49 In nf-core/seqsubmit;

· ochkalova opened on Mar 26, 2026

Push all test data to nf-datasets

enhancementNew feature or requestNew feature or request

Status: Open.

#48 In nf-core/seqsubmit;

· ochkalova opened on Mar 26, 2026

Refactor FASTA validation

enhancementNew feature or requestNew feature or request

Status: Open.

#47 In nf-core/seqsubmit;

· ochkalova opened on Mar 26, 2026

Update pipeline to use MultiQC of latest version

bugSomething isn't workingSomething isn't working

Status: Open.

#46 In nf-core/seqsubmit;

· ochkalova opened on Mar 26, 2026

Add modules for CSV/TSV metadata generation

enhancementNew feature or requestNew feature or request

Status: Open.

#44 In nf-core/seqsubmit;

· ochkalova opened on Mar 26, 2026

Remove references for params from modules and subworkflows

enhancementNew feature or requestNew feature or request

Status: Open.

#43 In nf-core/seqsubmit;

· ochkalova opened on Mar 25, 2026

Track versions in all workflows of the pipeline

bugSomething isn't workingSomething isn't working

Status: Open.

#41 In nf-core/seqsubmit;

· ochkalova opened on Mar 19, 2026

Add BUSCO for quality calculation for eukaryotic MAGs/bins

enhancementNew feature or requestNew feature or request

Status: Open.

#40 In nf-core/seqsubmit;

· KateSakharova opened on Mar 19, 2026

Accept assembly submissions for raw-reads not submitted to ENA

enhancementNew feature or requestNew feature or request

Status: Open.

#29 In nf-core/seqsubmit;

· KateSakharova opened on Feb 19, 2026

Add a subworkflow to upload raw reads to ENA

enhancementNew feature or requestNew feature or request

Status: Open.

#28 In nf-core/seqsubmit;

· mberacochea opened on Feb 12, 2026

[ENA] For metagenomic assemblies the pipeline should inform users that ERZ accessions are just temporary

assembly_submit

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#25 In nf-core/seqsubmit;

· mberacochea opened on Nov 5, 2025