Skip to content

Refactor FASTA validation #47

@ochkalova

Description

@ochkalova

Description of feature

  1. Replace customized FASTAVALIDATOR module with standard nf-core FASTAVALIDATOR + countFasta operator
FASTAVALIDATOR (
       genome_fasta,
        "true" // enables number of contigs check - ENA requires more than 1 contig for a bin/MAG submission
    )
  1. Add some logging to track discarded files

Metadata

Metadata

Assignees

No one assigned

    Labels

    enhancementNew feature or request

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions