task-trajectory-analysis

PyRod - Tracing water molecules in molecular dynamics simulations

A pocket volume analyzer for use in protein modeling.

MD pharmacophores and virtual screening

Solvation Structure and Thermodynamic Mapping

🚂 Python API for Emma's Markov Model Algorithms 🚂

🏗️ Statistical models for biomolecular dynamics 🏗️

gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.

MD trajectory analysis using protein-ligand Interaction Fingerprints

Biomolecular simulation trajectory/data analysis.

Detect and characterize binding pockets from molecular simulations.

An open library for the analysis of molecular dynamics trajectories

MDAnalysis is a Python library to analyze molecular dynamics simulations.

A Python Package for Protein Dynamics Analysis

HTMD: Programming Environment for Molecular Discovery

Python interface of cpptraj

Contact map analysis for biomolecules; based on MDTraj

Fast and All atom Protein-Ligand Interaction Profiler

Dynamic pharmacophore modeling of molecular interactions

Powerful, efficient particle trajectory analysis in scientific Python.

Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation