entity-trajectory

A pocket volume analyzer for use in protein modeling.

MD pharmacophores and virtual screening

Public development project of the LAMMPS MD software package

WebGL protein viewer

OpenMM is a toolkit for molecular simulation using high performance GPU code.

PyRod - Tracing water molecules in molecular dynamics simulations

End-To-End Molecular Dynamics (MD) Engine using PyTorch

Solvation Structure and Thermodynamic Mapping

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

Detect and characterize binding pockets from molecular simulations.

🏗️ Statistical models for biomolecular dynamics 🏗️

Differentiable, Hardware Accelerated, Molecular Dynamics

Dynamic pharmacophore modeling of molecular interactions

Fast and All atom Protein-Ligand Interaction Profiler

Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation

Powerful, efficient particle trajectory analysis in scientific Python.

A comprehensive macromolecular library

🚂 Python API for Emma's Markov Model Algorithms 🚂

An open library for the analysis of molecular dynamics trajectories

MDAnalysis is a Python library to analyze molecular dynamics simulations.