oracle-platform

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challagandla / oracle-histone-chip

ORACLE histone ChIP-seq pipeline (Snakemake): QC, Bowtie2, MACS2 broad peaks, DiffBind differential binding, monaLisa/JASPAR motifs, deepTools, MultiQC (human/mouse/rat).

bioinformatics snakemake genomics computational-biology multiqc chip-seq histone-modifications epigenomics peak-calling deeptools diffbind oracle-platform motif-enrichment

Updated Jun 13, 2026
Python

challagandla / oracle-rnaseq

Star

ORACLE RNA-seq pipeline — STAR + DESeq2 + GSEA, multi-species, metadata-driven design

bioinformatics rna-seq snakemake genomics computational-biology deseq2 multiqc transcriptomics differential-expression gsea star-aligner oracle-platform

Updated Jun 12, 2026
Python

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