Search results

Depreciate the truncate_ancestors feature

Status: Open.

#1065 In tskit-dev/tsinfer;

· Duncan-JR opened on Jan 13, 2026

Switch from using sgkit.io.vcf to bio2zarr in an inference test

Status: Open.

#1064 In tskit-dev/tsinfer;

· Duncan-JR opened on Jan 13, 2026

Help: Cannot load haploid VCF from snp-sites. Fails with "Must add at least one sample individual

Status: Open.

#1061 In tskit-dev/tsinfer;

· mandagaby18ag-design opened on Oct 25, 2025

Allow <code>insert_proxy_samples</code> to change existing times, allowing historical samples.

Status: Open.

#1034 In tskit-dev/tsinfer;

· hyanwong opened on Jun 21, 2025

Expose <code>force_sample_times</code> in .infer()

Status: Open.

#1033 In tskit-dev/tsinfer;

· hyanwong opened on Jun 20, 2025

Better error message when "ds" passed directly to VariantData

Status: Open.

#1030 In tskit-dev/tsinfer;

· hyanwong opened on May 2, 2025

Make lmdb optional

Status: Open.

#1029 In tskit-dev/tsinfer;

· hyanwong opened on Apr 30, 2025

Raise friendly error if sequence length of VariantData is less than the site positions.

Status: Open.

#1028 In tskit-dev/tsinfer;

· benjeffery opened on Apr 7, 2025

Docs: replace "genealogy" with "ARG" globally?

Status: Open.

#1026 In tskit-dev/tsinfer;

· jeromekelleher opened on Mar 31, 2025

·  

Release 0.4.2

Update CLI to support both SampleData and VariantData

Status: Open.

#1004 In tskit-dev/tsinfer;

· benjeffery opened on Mar 6, 2025

·  

Release 0.4.2

Add BGEN example to tutorial

documentation

Status: Open.

#1003 In tskit-dev/tsinfer;

· benjeffery opened on Mar 6, 2025

VariantData.from_tree_sequence

Status: Open.

#991 In tskit-dev/tsinfer;

· hyanwong opened on Jan 16, 2025