Code to analyze calcium imaging data in Algamal et al. 2022, doi: https://doi.org/10.1101/2022.04.27.489759
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May 15, 2022 - MATLAB
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suite2p
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Two-photon calcium imaging of cross-orientation suppression across cortical depth in macaque V1. 4,785 ROIs across 28 depths (140-518um) reveal laminar shift from facilitation to suppression, paralleled by gradients in spatial frequency preference, tuning width, and orientation selectivity. Mixed-effects models and bootstrap CIs included.
python neuroscience calcium-imaging normalization visual-cortex macaque suite2p two-photon-imaging cross-orientation-suppression cortical-layers
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Feb 8, 2026 - Python
Enhanced suite2p implementation that includes a pipeline to track cell activity across sessions (days).
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Sep 19, 2025 - Python
Use your suite2p output to enhance your calcium imaging recording 'blink'. Good for presentations where projector quality might be an issue. Can help you avoid having to say 'it looks good on my screen here you've gotta believe me'
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Mar 25, 2026 - Python
CalciumImaging analysis matlab pipeline for suite2p outputs
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Nov 28, 2022 - MATLAB
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