snakemake-wrappers

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🐍 Snakemake wrappers for bioinformatics.

Custom wrappers for recurring MPUSP Snakemake rules

python bioinformatics snakemake wrappers snakemake-wrappers

Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low TSL, index with multiple tools

snakemake ensembl fair snakemake-workflow snakemake-wrappers

Align reads over a reference genome, filter aligned-reads, and mark duplicates

Snakemake workflow used to call peaks with Macs2

snakemake sambamba homer bowtie2 macs2 snakemake-workflow snakemake-wrappers

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