rcsb-pdb

Structural biology superpowers for AI coding agents: PyMOL, ChimeraX, AlphaFold DB, RCSB PDB, UniProt, and Rosetta workflows.

R Shiny workspace integrating connected biomedical evidence for molecular target investigation.

Automated pipeline for extracting FASTA sequences from RCSB PDB and performing multiple sequence alignment of flavivirus NS3 proteins using Clustal Omega.

Tool for fast inspection of PDB molecular files inside the terminal.

WebGPU molecular viewer for the RCSB PDB — browse, search, and display up to four structures at once, entirely in the browser

A comparative and ablation study exploring different models for protein-ligand binding affinity prediction. The model categories studied in this project include traditional machine learning, graph neural networks, and structural deep learning models.

Python tool that downloads PDB structures directly from RCSB - no BioPDB dependency - PDB Geometry 01

RCSB Protein Data Bank experimental structures