R package to Import and Modify SVG (XML) Graphic Files

A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)

Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data

The first GANs-based omics-to-omics translation framework

An python omics data toolkit for the analysis across biological scales

MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.

A reproduction of the primer tutorial in deep learning genomics proposed in Nature Genetics (2018) in Pytorch.

Metabolic Drug Repurposing Pipeline

Penalized Semiparametric Bayesian Cox Models

An R package for utilities to guide in-depth detection of circadian signals from omics time series data

Consensus pathway analysis module developed by the University of Nevada at Reno

Ultragsea computes preranked gene set enrichment much like fGSEA but is 100 times faster

RNA-seq analysis of glioma combination drug therapies

Codebase for the synthetic lethality project -- an innovative approach for condition-specific antiviral therapeutics.

Simulate and download multi-omics datasets, by selecting omics types, sample sizes, and other parameters.

spatial RNA-seq analysis in Glioblastoma using Python

My PhD thesis

A website for OpenProphetDB community.