low-input-sequencing

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CarrCE / low-input-nanopore

Nextflow pipeline quantifying enrichment from depletion-mode nanopore adaptive sampling of sub-nanogram DNA sequenced against a lambda carrier. Competitive assignment gives every read exactly one organism, so enrichment has an exact denominator.

bioinformatics nanopore nextflow reproducible-research metagenomics oxford-nanopore astrobiology adaptive-sampling biosignatures low-input-sequencing

Updated Aug 15, 2026
Python

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