Immunopeptidogenomics pipeline that builds a cryptic peptide database from RNA-seq and identifies non-canonical (cryptic) peptides in immunopeptidomics mass spectrometry data.
bioinformatics nextflow reproducible-research monash-university rnaseq pixi mhc mass-spectrometry hla cancer-research mutect2 stringtie nf-core cancer-immunotherapy gatk4 neoantigens star-aligner immunopeptidomics immunopeptidogenomics cryptic-peptides
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Updated
Jun 20, 2026 - Nextflow