h5ad
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Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
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Dec 3, 2025 - Python
The AnnSQL package enables SQL based queries on AnnData objects.
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Aug 20, 2025 - Python
Seurat v5 compatible HDF5 converter for single-cell data — h5ad, h5Seurat, h5mu, Loom with full spatial data support
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Apr 1, 2026 - R
Standalone library crate for deterministic single-cell input ingestion in the Kira stack.
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May 24, 2026 - Rust
Pretrained scRNA-seq toolkit for generating cell embeddings and depth-enriched gene expression directly from raw UMI counts.
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Jul 27, 2026 - Python
AnnData object creation, manipulation, and visualization for single-cell RNA-seq data analysis
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Apr 19, 2026 - Jupyter Notebook
Validate the semantic correctness, metadata completeness, provenance and AI readiness of Cell Painting datasets represented in AnnData.
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Jul 26, 2026 - Python
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