e-utilities

Here are 2 public repositories matching this topic...

cyanheads / pubmed-mcp-server

MCP server for the NCBI E-utilities API. Search PubMed, fetch article metadata and full text, generate citations, explore MeSH terms, and discover related research. STDIO or Streamable HTTP.

typescript mcp pubmed citations mesh ncbi biomedical ai-agents cloudflare-workers ai-tools pubmed-api model-context-protocol mcp-server e-utilities

Updated Mar 25, 2026
TypeScript

SidSin0809 / phyloseq-taxid-resolver

Star

Batch-resolve NCBI Taxonomy IDs (TaxIDs) from a phyloseq-style taxonomy CSV using Biopython Entrez, with a live tqdm progress bar, caching, resume, safe partial writes, and optional species-rank verification.

python bioinformatics metagenomics biopython entrez ncbi-taxonomy command-line-tool taxid microbiome ncbi tqdm phyloseq refseq e-utilities

Updated Sep 18, 2025
Python

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