What you need to process the Quarterly DepMap-Omics releases from Terra

Cancer Dependency Map package

CanDI - A global cancer data integrator

An integrative resource for deubiquitinating enzymes (DUBs) served at https://labsyspharm.github.io/dubportal

Package to predict dependencies between cell lines and genes using Network Representation Learning (NRL) based Link Prediction

DeepVul: A Multi-Task Transformer Model for Joint Prediction of Gene Essentiality and Drug Response

Interactive web viewer for TF ChIP-seq binding programs at canonical protein-coding TSSs (Ensembl GRCh38.114). Streamlit + Plotly + DuckDB; ~1,300 TFs × ~19,700 TSSs; NMF programs/archetypes, GTEx + DepMap overlays, atlas-wide TF×TF network.

A functional genomics framework for classifying homologous recombination deficiency and mapping PARP inhibitor sensitivity across DepMap cancer cell lines.

Data from the Broad's Project Achilles synthetic-lethal screen ready for use in R.

Digital patient generation and drug response prediction via TCGA-DepMap integration — CVAE virtual patients, multi-level similarity scoring, 578-compound drug profiling

DepMap-based FAM50A dependency analysis in colorectal cancer with TCGA projection and CRISPR knockdown simulation.