clinical-classification

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htlin222 / ngs-tertiary-analysis-skills

R pipeline for cancer genomics: BAM/VCF to ESMO-compliant clinical reports with OncoKB, variant classification (ESCAT/AMP-ASCO-CAP), CNV, fusion, TMB, MSI, and PubMed/Scopus literature retrieval

bioinformatics r ngs cancer-genomics variant-annotation precision-medicine quarto report-generation oncokb clinical-genomics targets-r esmo-2024 clinical-classification tumor-profiling genomic-reporting

Updated May 11, 2026
R

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clinical-classification

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htlin222 / ngs-tertiary-analysis-skills

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