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Complete assignment 2 #2

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137 changes: 117 additions & 20 deletions 02_activities/assignments/assignment_2.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -72,11 +72,78 @@
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]
}
],
"source": [
"all_paths = [\n",
" \"../../05_src/data/assignment_2_data/inflammation_01.csv\",\n",
Expand All @@ -93,10 +160,16 @@
" \"../../05_src/data/assignment_2_data/inflammation_12.csv\"\n",
"]\n",
"\n",
"#The all_paths is a list of strings, where each string is a relative path to a CSV file \n",
"#I am trying to chose the first CSV file in the list: all_paths[0]\n",
"with open(all_paths[0], 'r') as f:\n",
" # YOUR CODE HERE: Use the readline() or readlines() method to read the .csv file into a variable\n",
" \n",
" # YOUR CODE HERE: Iterate through the variable using a for loop and print each row for inspection"
" #readlines() will read the entire file and return a list where each element is one line (row) of text \n",
" rows = f.readlines()\n",
"\n",
" #This will loop through each text row and print it so we can visually see the file contents \n",
" for row in rows: \n",
" #This strip will remove the extra newline at the end \n",
" print(row.strip())"
]
},
{
Expand Down Expand Up @@ -130,7 +203,7 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 22,
"metadata": {
"id": "82-bk4CBB1w4"
},
Expand All @@ -139,18 +212,23 @@
"import numpy as np\n",
"\n",
"def patient_summary(file_path, operation):\n",
" #In this data set, each row is one patient (60 total) and each column is one day in the 40 day total period \n",
" data = np.loadtxt(fname=file_path, delimiter=',') # Load the data from the file\n",
" ax = 1 # This specifies that the operation should be done for each row (patient)\n",
"\n",
" # Implement the specific operation based on the 'operation' argument\n",
" # Choosing which statistic to compute based on the operation string\n",
" if operation == 'mean':\n",
" # YOUR CODE HERE: Calculate the mean (average) number of flare-ups for each patient\n",
" #Calculate the mean (average) number of flare-ups for each patient across 40 days\n",
" summary_values = np.mean(data, axis=ax)\n",
"\n",
" elif operation == 'max':\n",
" # YOUR CODE HERE: Calculate the maximum number of flare-ups experienced by each patient\n",
" #Calculate the maximum number of flare-ups experienced by each patient across 40 days\n",
" summary_values = np.max(data, axis=ax)\n",
"\n",
" elif operation == 'min':\n",
" # YOUR CODE HERE: Calculate the minimum number of flare-ups experienced by each patient\n",
" #Calculate the minimum number of flare-ups experienced by each patient across 40 days\n",
" summary_values = np.min(data, axis=ax)\n",
"\n",
" else:\n",
" # If the operation is not one of the expected values, raise an error\n",
Expand All @@ -161,11 +239,19 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 23,
"metadata": {
"id": "3TYo0-1SDLrd"
},
"outputs": [],
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"60\n"
]
}
],
"source": [
"# Test it out on the data file we read in and make sure the size is what we expect i.e., 60\n",
"# Your output for the first file should be 60\n",
Expand Down Expand Up @@ -228,7 +314,7 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 19,
"metadata": {
"id": "_svDiRkdIwiT"
},
Expand All @@ -251,7 +337,7 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 20,
"metadata": {
"id": "LEYPM5v4JT0i"
},
Expand All @@ -260,16 +346,26 @@
"# Define your function `detect_problems` here\n",
"\n",
"def detect_problems(file_path):\n",
" #YOUR CODE HERE: Use patient_summary() to get the means and check_zeros() to check for zeros in the means\n",
" #Use patient_summary() to get the means and check_zeros() to check for zeros in the means\n",
" means = patient_summary(file_path, 'mean')\n",
"\n",
" return"
" #This will return True if there is at least one zero anyhwere in the input array \n",
" return check_zeros(means)"
]
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 21,
"metadata": {},
"outputs": [],
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"False\n"
]
}
],
"source": [
"# Test out your code here\n",
"# Your output for the first file should be False\n",
Expand Down Expand Up @@ -314,7 +410,8 @@
"provenance": []
},
"kernelspec": {
"display_name": "Python 3",
"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
"language_info": {
Expand All @@ -327,9 +424,9 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.8"
"version": "3.13.12"
}
},
"nbformat": 4,
"nbformat_minor": 0
"nbformat_minor": 4
}