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feat: add ml/strided/dkmeans-compute-inertia
#13004
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431 changes: 431 additions & 0 deletions
431
lib/node_modules/@stdlib/ml/strided/dkmeans-compute-inertia/README.md
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137 changes: 137 additions & 0 deletions
137
lib/node_modules/@stdlib/ml/strided/dkmeans-compute-inertia/benchmark/benchmark.js
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| /** | ||
| * @license Apache-2.0 | ||
| * | ||
| * Copyright (c) 2026 The Stdlib Authors. | ||
| * | ||
| * Licensed under the Apache License, Version 2.0 (the "License"); | ||
| * you may not use this file except in compliance with the License. | ||
| * You may obtain a copy of the License at | ||
| * | ||
| * http://www.apache.org/licenses/LICENSE-2.0 | ||
| * | ||
| * Unless required by applicable law or agreed to in writing, software | ||
| * distributed under the License is distributed on an "AS IS" BASIS, | ||
| * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| * See the License for the specific language governing permissions and | ||
| * limitations under the License. | ||
| */ | ||
|
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| 'use strict'; | ||
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| // MODULES // | ||
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| var bench = require( '@stdlib/bench' ); | ||
| var Int32Array = require( '@stdlib/array/int32' ); | ||
| var isnan = require( '@stdlib/math/base/assert/is-nan' ); | ||
| var uniform = require( '@stdlib/random/array/uniform' ); | ||
| var randi = require( '@stdlib/random/base/randi' ); | ||
| var pow = require( '@stdlib/math/base/special/pow' ); | ||
| var floor = require( '@stdlib/math/base/special/floor' ); | ||
| var format = require( '@stdlib/string/format' ); | ||
| var pkg = require( './../package.json' ).name; | ||
| var dcomputeInertia = require( './../lib/dkmeans_compute_inertia.js' ); | ||
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| // VARIABLES // | ||
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| var LAYOUTS = [ | ||
| 'row-major', | ||
| 'column-major' | ||
| ]; | ||
| var K = 4; // number of centroids | ||
| var options = { | ||
| 'dtype': 'float64' | ||
| }; | ||
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| // FUNCTIONS // | ||
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| /** | ||
| * Creates a benchmark function. | ||
| * | ||
| * @private | ||
| * @param {string} order - storage layout | ||
| * @param {PositiveInteger} N - number of data points and features along each dimension | ||
| * @returns {Function} benchmark function | ||
| */ | ||
| function createBenchmark( order, N ) { | ||
| var labels; | ||
| var LDX; | ||
| var LDC; | ||
| var X; | ||
| var C; | ||
| var i; | ||
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| X = uniform( N*N, -10000.0, 10000.0, options ); | ||
| C = uniform( K*N, -10000.0, 10000.0, options ); | ||
| labels = new Int32Array( N ); | ||
| for ( i = 0; i < N; i++ ) { | ||
| labels[ i ] = randi() % K; | ||
| } | ||
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| if ( order === 'column-major' ) { | ||
| LDX = N; | ||
| LDC = K; | ||
| } else { | ||
| LDX = N; | ||
| LDC = N; | ||
| } | ||
| return benchmark; | ||
|
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| /** | ||
| * Benchmark function. | ||
| * | ||
| * @private | ||
| * @param {Benchmark} b - benchmark instance | ||
| */ | ||
| function benchmark( b ) { | ||
| var z; | ||
| var i; | ||
|
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| b.tic(); | ||
| for ( i = 0; i < b.iterations; i++ ) { | ||
| z = dcomputeInertia( order, N, N, K, 'sqeuclidean', X, LDX, C, LDC, labels, 1 ); | ||
| if ( isnan( z ) ) { | ||
| b.fail( 'should not return NaN' ); | ||
| } | ||
| } | ||
| b.toc(); | ||
| if ( isnan( z ) ) { | ||
| b.fail( 'should not return NaN' ); | ||
| } | ||
| b.pass( 'benchmark finished' ); | ||
| b.end(); | ||
| } | ||
| } | ||
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| // MAIN // | ||
|
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| /** | ||
| * Main execution sequence. | ||
| * | ||
| * @private | ||
| */ | ||
| function main() { | ||
| var min; | ||
| var max; | ||
| var ord; | ||
| var N; | ||
| var f; | ||
| var i; | ||
| var k; | ||
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| min = 1; // 10^min | ||
| max = 6; // 10^max | ||
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| for ( k = 0; k < LAYOUTS.length; k++ ) { | ||
| ord = LAYOUTS[ k ]; | ||
| for ( i = min; i <= max; i++ ) { | ||
| N = floor( pow( pow( 10, i ), 1.0/2.0 ) ); | ||
| f = createBenchmark( ord, N ); | ||
| bench( format( '%s:order=%s,size=%d', pkg, ord, N*N ), f ); | ||
| } | ||
| } | ||
| } | ||
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| main(); |
142 changes: 142 additions & 0 deletions
142
lib/node_modules/@stdlib/ml/strided/dkmeans-compute-inertia/benchmark/benchmark.native.js
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| /** | ||
| * @license Apache-2.0 | ||
| * | ||
| * Copyright (c) 2026 The Stdlib Authors. | ||
| * | ||
| * Licensed under the Apache License, Version 2.0 (the "License"); | ||
| * you may not use this file except in compliance with the License. | ||
| * You may obtain a copy of the License at | ||
| * | ||
| * http://www.apache.org/licenses/LICENSE-2.0 | ||
| * | ||
| * Unless required by applicable law or agreed to in writing, software | ||
| * distributed under the License is distributed on an "AS IS" BASIS, | ||
| * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| * See the License for the specific language governing permissions and | ||
| * limitations under the License. | ||
| */ | ||
|
|
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| 'use strict'; | ||
|
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| // MODULES // | ||
|
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| var resolve = require( 'path' ).resolve; | ||
| var bench = require( '@stdlib/bench' ); | ||
| var Int32Array = require( '@stdlib/array/int32' ); | ||
| var isnan = require( '@stdlib/math/base/assert/is-nan' ); | ||
| var uniform = require( '@stdlib/random/array/uniform' ); | ||
| var randi = require( '@stdlib/random/base/randi' ); | ||
| var pow = require( '@stdlib/math/base/special/pow' ); | ||
| var floor = require( '@stdlib/math/base/special/floor' ); | ||
| var tryRequire = require( '@stdlib/utils/try-require' ); | ||
| var format = require( '@stdlib/string/format' ); | ||
| var pkg = require( './../package.json' ).name; | ||
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| // VARIABLES // | ||
|
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| var dcomputeInertia = tryRequire( resolve( __dirname, './../lib/dkmeans_compute_inertia.native.js' ) ); | ||
| var opts = { | ||
| 'skip': ( dcomputeInertia instanceof Error ) | ||
| }; | ||
| var LAYOUTS = [ | ||
| 'row-major', | ||
| 'column-major' | ||
| ]; | ||
| var K = 4; // number of centroids | ||
| var options = { | ||
| 'dtype': 'float64' | ||
| }; | ||
|
|
||
|
|
||
| // FUNCTIONS // | ||
|
|
||
| /** | ||
| * Creates a benchmark function. | ||
| * | ||
| * @private | ||
| * @param {string} order - storage layout | ||
| * @param {PositiveInteger} N - number of data points and features along each dimension | ||
| * @returns {Function} benchmark function | ||
| */ | ||
| function createBenchmark( order, N ) { | ||
| var labels; | ||
| var LDX; | ||
| var LDC; | ||
| var X; | ||
| var C; | ||
| var i; | ||
|
|
||
| X = uniform( N*N, -10000.0, 10000.0, options ); | ||
| C = uniform( K*N, -10000.0, 10000.0, options ); | ||
| labels = new Int32Array( N ); | ||
| for ( i = 0; i < N; i++ ) { | ||
| labels[ i ] = randi() % K; | ||
| } | ||
|
|
||
| if ( order === 'column-major' ) { | ||
| LDX = N; | ||
| LDC = K; | ||
| } else { | ||
| LDX = N; | ||
| LDC = N; | ||
| } | ||
| return benchmark; | ||
|
|
||
| /** | ||
| * Benchmark function. | ||
| * | ||
| * @private | ||
| * @param {Benchmark} b - benchmark instance | ||
| */ | ||
| function benchmark( b ) { | ||
| var z; | ||
| var i; | ||
|
|
||
| b.tic(); | ||
| for ( i = 0; i < b.iterations; i++ ) { | ||
| z = dcomputeInertia( order, N, N, K, 'sqeuclidean', X, LDX, C, LDC, labels, 1 ); | ||
| if ( isnan( z ) ) { | ||
| b.fail( 'should not return NaN' ); | ||
| } | ||
| } | ||
| b.toc(); | ||
| if ( isnan( z ) ) { | ||
| b.fail( 'should not return NaN' ); | ||
| } | ||
| b.pass( 'benchmark finished' ); | ||
| b.end(); | ||
| } | ||
| } | ||
|
|
||
|
|
||
| // MAIN // | ||
|
|
||
| /** | ||
| * Main execution sequence. | ||
| * | ||
| * @private | ||
| */ | ||
| function main() { | ||
| var min; | ||
| var max; | ||
| var ord; | ||
| var N; | ||
| var f; | ||
| var i; | ||
| var k; | ||
|
|
||
| min = 1; // 10^min | ||
| max = 6; // 10^max | ||
|
|
||
| for ( k = 0; k < LAYOUTS.length; k++ ) { | ||
| ord = LAYOUTS[ k ]; | ||
| for ( i = min; i <= max; i++ ) { | ||
| N = floor( pow( pow( 10, i ), 1.0/2.0 ) ); | ||
| f = createBenchmark( ord, N ); | ||
| bench( format( '%s::native:order=%s,size=%d', pkg, ord, N*N ), opts, f ); | ||
| } | ||
| } | ||
| } | ||
|
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| main(); |
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I think this package needs to be renamed:
dkmeans-inertia. The use ofcomputein the name is redundant, IMO. Your API alias then becomesdkmeansInertia.