v1.5.4-statgen.3

Better chunk counters.

• Rename chunks counter (input validation) to input-chunks.
• Add remaining-chunks counter (quality control).
• Add project version to artifact names (like we do in Cloudgene).

Full Changelog: v1.5.4-statgen.2...v1.5.4-statgen.3

v1.5.4-statgen.2

Code generation and version bumps.

• Generate BuildInfo class to access POM data as static constants.
• Bump Maven plugin versions (major).
• Bump Java dependency versions (minor).

Full Changelog: v1.5.4-statgen.1...v1.5.4-statgen.2

v1.5.4-statgen.1

Better counters.

• Add counters: chunks, chromosomes-per-sample, liftover
• Add values: input-phase, chromosome-list.
• Remove message asking to contact us, and related CLI parameters: --contactName, --contactEmail
• Bump Java to v21.
• Add VcfUtilTest, ChromosomeUtil, ChromosomeUtilTest, GenomicToolsTest.
• Code quality.

Full Changelog: v1.5.3-statgen.3...v1.5.4-statgen.1

v1.5.3-statgen.3

Print r2Filter value even when it's the default 0.

Full Changelog: 1.5.3-statgen.2...v1.5.3-statgen.3

v1.5.3-statgen.2

• Sync with upstream.
• Add tests.
• Ensure new release has our custom code.

Full Changelog: 1.5.3-statgen.1...1.5.3-statgen.2

1.5.3-statgen.1

First statgen release.

Remove MT from valid chromosome set.