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Clean up composition evaluation and add PCA baseline#14

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nkotelevskii wants to merge 19 commits into
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codex/code-cleanup-pca-baseline
Open

Clean up composition evaluation and add PCA baseline#14
nkotelevskii wants to merge 19 commits into
mainfrom
codex/code-cleanup-pca-baseline

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@nkotelevskii
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Summary

  • refactor multidimensional composition evaluation so EntropicOT and baseline aggregators share score loading, matrix stacking, and result-row creation
  • add PCAUncertaintyOrdering as a z-scored one-component PCA baseline for every configured composition
  • add --skip_pca_baseline for runs that should keep only the previous EntropicOT composition results
  • repair scripts/compose_multidimensional_scores.py for the current EntropicOT API
  • expand README with the current pipeline and add fast tests for PCA, 1D EntropicOT ordering, and evaluator smoke coverage

Tests

  • PYTHONDONTWRITEBYTECODE=1 .venv/bin/python -m unittest discover
  • .venv/bin/python -m py_compile scripts/full_evaluation.py scripts/compute_measures_1d.py scripts/compose_multidimensional_scores.py
  • git diff --check

Add PCA composition baseline and tests
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