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get_default_temp_dir breaks user concurent execution on same host.

Status: Open.

#152 In smirarab/sepp;

· EricDeveaud opened on Jul 7, 2026

Unintended directory rename

Status: Open.

#143 In smirarab/sepp;

· berkelem opened on Mar 17, 2025

PASTA fails when running UPP

Status: Open.

#142 In smirarab/sepp;

· luisas opened on Mar 3, 2025

Getting JavaLang error on Ubuntu 22.04.5 LTS

Status: Open.

#140 In smirarab/sepp;

· DeadlineWasYesterday opened on Feb 1, 2025

Failed to run hmmeralign

Status: Open.

#139 In smirarab/sepp;

· liyunfeng107 opened on Nov 30, 2024

UPP hangs with no error or info given

Status: Open.

#128 In smirarab/sepp;

· aravenscraft opened on Aug 3, 2023

TIPP2 doesn't work with SEPP bioconda recipe

Status: Open.

#102 In smirarab/sepp;

· nick-youngblut opened on Jan 22, 2021

sepp should reject distant sequences

enhancement

Status: Open.

#73 In smirarab/sepp;

· sjanssen2 opened on Jul 9, 2019

configure mafft location

Status: Open.

#42 In smirarab/sepp;

· bruceamurphy opened on Mar 18, 2019

Add Selenocysteine ("U") to the set of amino acids

enhancement

Status: Open.

#39 In smirarab/sepp;

· andrewalverson opened on Oct 5, 2018

Support for pplacer refpkgs

Status: Open.

#17 In smirarab/sepp;

· geronimp opened on Apr 18, 2017

TIPP zip file fails to work on MAC

Status: Open.

#12 In smirarab/sepp;

· namphuon opened on May 19, 2015