Skala Lab

FLIM-focused framework for multimodal single-cell imaging: extract features from FLIM and QPI data, then analyze any tabular dataset interactively.

Python scripts relating to the data analysis for "Autofluorescence lifetime imaging resolves cell heterogeneity within peripheral blood mononuclear cells" [doi#]

Tools, software and other relevant programming information

Data and executables for FLIM Playground

In-progress code for the bioreactor system's stage, peristaltic pump, and GUI

End-to-end pipeline for segmenting and tracking T-cells

Applies Cellpose mask to raw FLIM image with SDT format and writes a new ROI-binned SDT file where all pixels of any given cell object are assigned the aggregated decay from the pooling of raw object pixel decays.