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Extract DAPI/PolyT quantifications from vpt/merlin output into correct format

bugSomething isn't workingSomething isn't working

Status: Open.

#43 In simonmfr/cellseg-benchmark;

· simonmfr opened on Mar 6, 2026

Groundtruth for cell type proportions

Status: Open.

#41 In simonmfr/cellseg-benchmark;

· hspitzer opened on Jan 26, 2026

Metric: runtime and memory

Status: Open.

#39 In simonmfr/cellseg-benchmark;

· hspitzer opened on Jan 26, 2026

Distance Analysis (Allen)

Status: Open.

#37 In simonmfr/cellseg-benchmark;

· jonas2612 opened on Jan 8, 2026

Metric: ficture f1 score

Status: Open.

#36 In simonmfr/cellseg-benchmark;

· hspitzer opened on Dec 17, 2025

prefer module-level imports

Status: Open.

#35 In simonmfr/cellseg-benchmark;

· hspitzer opened on Dec 17, 2025

MAST-RE

bugSomething isn't workingSomething isn't working

Status: Open.

#34 In simonmfr/cellseg-benchmark;

· jonas2612 opened on Dec 12, 2025

Metric: Assigned transcript

Status: Open.

#32 In simonmfr/cellseg-benchmark;

· simonmfr opened on Nov 28, 2025

Evaluate Ficture

Status: Open.

#31 In simonmfr/cellseg-benchmark;

· simonmfr opened on Nov 28, 2025

Cell boundary stains

Status: Open.

#30 In simonmfr/cellseg-benchmark;

· simonmfr opened on Nov 28, 2025

Vizgen Ficture failed

bugSomething isn't workingSomething isn't working

Status: Open.

#29 In simonmfr/cellseg-benchmark;

· jonas2612 opened on Nov 27, 2025

Run DEA across segmentations

enhancementNew feature or requestNew feature or request

Status: Open.

#28 In simonmfr/cellseg-benchmark;

· simonmfr opened on Nov 25, 2025