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Merged
maxsibilla merged 4 commits into from
Aug 4, 2026
Merged

Libpitt/977 add constraint uberon #979

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716899b
Merge pull request #976 from sennetconsortium/libpitt/961-dataset-hie…
maxsibilla Jul 20, 2026
ba7714b
Merge branch 'main' of https://github.com/sennetconsortium/entity-api
maxsibilla Jul 20, 2026
870dd3a
Bumping version
maxsibilla Jul 20, 2026
2bc13cf
Add constraint for uberon code - #977
libpitt Aug 4, 2026
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2 changes: 1 addition & 1 deletion VERSION
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Original file line number Diff line number Diff line change
@@ -1 +1 @@
1.10.5
1.10.6
2 changes: 1 addition & 1 deletion entity-api-spec.yaml
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@@ -1,7 +1,7 @@
openapi: 3.0.0
info:
description: 'The SenNet Entity API is a standard RESTful web service with create, update and read operations for the standard SenNet provenance graph entities.'
version: 1.10.5
version: 1.10.6
title: SenNet Entity API
contact:
name: SenNet Help Desk
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6 changes: 6 additions & 0 deletions src/lib/constraints/sample.py
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Expand Up @@ -18,6 +18,12 @@ def build_sample_organ_constraints(entity, constraints=None):
descendant = build_constraint_unit(Entities.SAMPLE, [SpecimenCategories.SUSPENSION])
constraints.append(build_constraint(ancestor, [descendant]))

# Sample suspension ---> Sample organ of blood (organ_uberon)
ancestor = build_constraint_unit(
entity, [SpecimenCategories.ORGAN], [Ontology.ops(as_data_dict=True, val_key='organ_uberon').organ_types()['BLOOD']]
)
constraints.append(build_constraint(ancestor, [descendant]))

# Sample block ---> Sample organ
ancestor = build_constraint_unit(entity, [SpecimenCategories.ORGAN])
descendant = build_constraint_unit(Entities.SAMPLE, [SpecimenCategories.BLOCK])
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