Skip to content

Add downloadable cells dataset via scverse-misc#1149

Open
timtreis wants to merge 2 commits into
mainfrom
add-cells-dataset
Open

Add downloadable cells dataset via scverse-misc#1149
timtreis wants to merge 2 commits into
mainfrom
add-cells-dataset

Conversation

@timtreis

@timtreis timtreis commented Jun 19, 2026

Copy link
Copy Markdown
Member

Summary

Exposes spatialdata.datasets.cells() alongside blobs/raccoon. It downloads the cells example dataset and loads it as a SpatialData object.

Note: The datasets feature in scverse-misc is not released yet; >=0.0.10 will not resolve until that release is published. The runtime path was validated against scverse-misc@main.

timtreis and others added 2 commits June 19, 2026 19:20
Expose spatialdata.datasets.cells() alongside blobs/raccoon. It downloads
the cells example dataset and loads it as a SpatialData object, reusing the
scverse-misc datasets infrastructure (parse_registry + fetch with the
built-in spatialdata loader) rather than reimplementing a downloader.

- ship src/spatialdata/datasets.yaml registry (base_url + cells.zip sha256)
- add scverse-misc[datasets]>=0.0.10 dependency
- bump requires-python and ruff target to 3.12 (scverse-misc requires >=3.12)
- update CI matrix 3.11 -> 3.12
- docs + network-free registry test and a slow download test

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant