STAR junction summary for junction exp heatmap

[pj-sullivan]

Purpose/implementation Section

What scientific question is your analysis addressing?

Making the STAR SJ junction expression heatmaps

What was your approach?

Calculate "library size" from star junctions for CPM calculations - probably should update this to the real value.
Summarize junction counts per plot group for all genes.
Configured this repo to write to RDS.
Added a fix for events with antisense genes being represented twice (also wrote the logic directly into the initial script to deal with the problem if reran).

Draft as I need to finish the data release that supplied the files and update docs.

What GitHub issue does your pull request address?

Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.

Which areas should receive a particularly close look?

Is there anything that you want to discuss further?

Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?

Results

What types of results are included (e.g., table, figure)?

What is your summary of the results?

Reproducibility Checklist

• The dependencies required to run the code in this pull request have been added to the project Dockerfile.

Documentation Checklist

• This analysis module has a README and it is up to date.
• The analytical code is documented and contains comments.