Updated field line following diagnostics#533
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The routines to compute the radial displacement of a magnetic field line and the radial magnetic field correlation length, useful to evaluate the occurrence of a nonzonal transion, are added to the `Diagnostics` class.
…/pyro-kinetics/pyrokinetics into enhancements/nonzonal_transition
… codes available in pyro
…dded a small routine to calculate the stocashtic diffusion coefficient - see Nevins et al, PRL, 2011
…ion_units # Conflicts: # src/pyrokinetics/diagnostics/__init__.py
…_units' into enhancements/nonzonal_transition_units
…_units' into enhancements/nonzonal_transition_units
# Conflicts: # src/pyrokinetics/diagnostics/__init__.py # src/pyrokinetics/local_geometry/metric.py
…_units' into enhancements/nonzonal_transition_units
# Conflicts: # docs/examples/example_read_pyroscan_output.py # tests/test_pyroscan.py
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This PR updates/adds field line following diagnostics
FieldLinewhich calculates all things related to field line integration stuff likeIt does this in a unit aware method so works in any convention.
I have added standard field line integrator
follow_field_linewhich all the diagnostics that need it use which has several integration schemes from central differences to RK4.There are some docs that describe that the code does too.