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    40 repositories

    • cohd_api

      Public
      Jupyter Notebook
      •
      Other
      •4•1•2•0•Updated Nov 5, 2024Nov 5, 2024

    • ehr_prevalence

      Public
      EHR Prevalence and Co-occurrence Analysis
      Python
      •3•3•0•0•Updated Jul 22, 2024Jul 22, 2024

    • PICOX

      Public
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Jul 9, 2024Jul 9, 2024

    • cohd-rare

      Public
      JavaScript
      •
      Other
      •1•1•0•0•Updated Jul 5, 2024Jul 5, 2024

    • PubMed-RCT-Outcome-Extraction

      Public
      MIT License
      •2•4•0•0•Updated Jan 17, 2024Jan 17, 2024

    • eMERGE-GIRA-CDE

      Public
      Python
      •0•0•0•0•Updated Oct 19, 2023Oct 19, 2023

    • covid_subgrouping

      Public
      COVID-19 Subgrouping
      Jupyter Notebook
      •0•0•0•0•Updated Aug 22, 2023Aug 22, 2023

    • GIST

      Public
      GIST 3.0: An Automatic Clinical Trial Generalizability Assessment Framework
      JavaScript
      •1•1•1•1•Updated Jun 22, 2023Jun 22, 2023

    • eMERGE-Invitae-Redox

      Public
      Python
      •0•1•0•0•Updated Apr 6, 2023Apr 6, 2023

    • eIV-recruitement-support-redcap

      Public
      Python
      •1•0•0•0•Updated Mar 22, 2023Mar 22, 2023

    • EvidenceMap_Model

      Public
      a gold standard dataset of randomized controlled trial (RCT) abstracts annotated with the EvidenceMap representation
      Python
      •2•1•0•0•Updated Feb 2, 2023Feb 2, 2023

    • COVID19-TrialFinder

      Public
      HTML
      •3•2•1•2•Updated Feb 2, 2023Feb 2, 2023

    • doc2hpo

      Public
      Java
      •0•0•1•14•Updated Dec 16, 2022Dec 16, 2022

    • mcephe

      Public
      Python
      •1•1•0•7•Updated Dec 8, 2022Dec 8, 2022

    • MCR-learning-toolkits

      Public
      Python
      •0•0•0•15•Updated Dec 8, 2022Dec 8, 2022

    • ontology-based-clinical-study-categorization

      Public
      Data, source code, and demo for manuscript Ontology-based Classification of Clinical Studies by Their Conditions
      Java
      •1•1•0•0•Updated Jun 30, 2022Jun 30, 2022

    • oard-react

      Public
      R
      •3•0•0•0•Updated Apr 25, 2022Apr 25, 2022

    • Covid19-Breakthrough

      Public
      R
      •0•0•0•0•Updated Mar 22, 2022Mar 22, 2022

    • MedicalCodingSequence

      Public
      This package helps to convert clinical data into Medical Coding Sequences.
      Python
      •0•0•0•0•Updated Jan 6, 2022Jan 6, 2022

    • Criteria_Phenotypes_ReferenceforJRRAim1

      Public
      This repository just contains codes for phenotypes used in an exploration project that examines the effects of different criteria combinations. The codes are in…
      0•0•0•0•Updated Dec 14, 2021Dec 14, 2021

    • COVID19-TrialMatcher

      Public
      An Interactive Interface for the Search of Clinical Trials Matching the Target Trial
      Python
      •1•0•0•0•Updated Oct 30, 2021Oct 30, 2021

    • CV_criteria

      Public
      2•0•0•0•Updated Aug 4, 2021Aug 4, 2021

    • Intervention_Normalizer

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 25, 2021Jun 25, 2021

    • Generalizability_of_RCT_Follow_Up_Time

      Public
      0•0•0•0•Updated Jun 16, 2021Jun 16, 2021

    • MD-Attention

      Public
      MD-informed Self-Attention: a neuro-symbolic model for machine reading comprehension of clinical research literature.
      Python
      •2•0•0•0•Updated Apr 9, 2021Apr 9, 2021

    • UMLS-EDA

      Public
      A light-weighted UMLS-based data augmentation for biomedical NLP tasks including Named Entity Recognition and sentence classification.
      natural-language-processingnamedumls
      natural-language-processingnamedumlsdata-augmentationbiomedical-named-entity-recognition
      Python
      •
      MIT License
      •1•10•0•0•Updated Apr 6, 2021Apr 6, 2021

    • cohd-covid

      Public
      Python
      •1•0•0•0•Updated Mar 30, 2021Mar 30, 2021

    • delirium

      Public
      Delirium classification model
      Jupyter Notebook
      •1•1•0•0•Updated Mar 25, 2021Mar 25, 2021

    • COVID19-Structured_Trials

      Public
      An OMOP Common Data Model-Compliant Annotated Corpus for COVID-19 Clinical Trials
      0•0•0•0•Updated Feb 19, 2021Feb 19, 2021

    • cohd_api_fork

      Public archive
      Columbia Open Health Data API
      Jupyter Notebook
      •
      Other
      •3•2•0•0•Updated Nov 17, 2020Nov 17, 2020
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