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    14 repositories

    • snakemake-binomial_regression

      Public
      R
      •
      MIT License
      •0•2•2•0•Updated Mar 23, 2026Mar 23, 2026

    • DeepProfilerCellPainting

      Public
      Morphological profiling using deep learning
      Python
      •
      Other
      •49•0•0•0•Updated Jan 12, 2026Jan 12, 2026

    • snakemake-decontx_islet_glucose_timecourse

      Public
      Decontamination script for islet data
      Python
      •1•0•1•0•Updated Jul 18, 2025Jul 18, 2025

    • publication-visium_preprocessing

      Public
      Workflow to make FASTQs, run SpaceRanger count, and bleed correction methods on Visium spatial data.
      Python
      •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

    • publication-islet_glucose_timecourse

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • nextflow-sc_dge

      Public
      R
      •
      MIT License
      •5•0•1•1•Updated Apr 21, 2024Apr 21, 2024

    • snakemake-polygenic_priority_score

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Mar 1, 2024Mar 1, 2024

    • T2D_HuGeAMP_database

      Public
      Data scraped from https://t2d.hugeamp.org/method.html?trait=t2d&dataset=mccarthy
      HTML
      •0•0•0•0•Updated Mar 15, 2023Mar 15, 2023

    • flexible_variance_decomposition

      Public
      Flexible variance decomposition
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 12, 2022Apr 12, 2022

    • nf_scrna_deconvolution

      Public
      CellSNP-Vireo deconvolution pipeline, with optional genotype input.
      Nextflow
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Mar 31, 2021Mar 31, 2021

    • snakemake-qtl

      Public
      Snakemake pipeline for molecular trait QTL mapping
      Python
      •
      MIT License
      •2•1•0•0•Updated Sep 18, 2020Sep 18, 2020

    • vg_wdl

      Public
      Workflow Description Language (WDL) scripts for common vg workflows
      WDL
      •
      MIT License
      •11•0•0•0•Updated Jan 6, 2020Jan 6, 2020

    • atac-seq-pipeline

      Public
      ENCODE ATAC-seq pipeline
      Python
      •
      MIT License
      •170•0•0•0•Updated Nov 25, 2019Nov 25, 2019

    • chip-seq-pipeline2

      Public
      ENCODE ChIP-seq pipeline
      Python
      •
      MIT License
      •119•0•0•0•Updated Nov 21, 2019Nov 21, 2019
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