BioTools-Dev

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4 repositories

rapdtool-benchmark
Public
Reproducible benchmark kit for RaPDTool — type-material–anchored, genome-resolved metagenomics vs Kraken2 and MetaPhlAn4. Scripts, curated inputs, gold standard…
Python
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Other
•0•0•0•0•Updated Sep 14, 2026Sep 14, 2026
RaPDTool
Public
Rapid Profiling and Deconvolution Tool for Metagenomes
bioinformatics metagenomics metagenome-assembled-genomes
bioinformatics metagenomics metagenome-assembled-genomes microbial-taxonomy
Python
•
MIT License
•86•114•0•0•Updated Sep 14, 2026Sep 14, 2026
mash_boundaries
Public
We establish strict, actionable thresholds: species at d ≤ 0.043 and genus at 0.043 < d ≤ 0.13. These measurements demonstrate that current standards are fundam…
Python
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Other
•0•0•0•0•Updated Sep 1, 2026Sep 1, 2026
GenoScanner
Public
Experimental tool to taxonomically classify microbial genomes in a few minutes
taxonomy genome-assembly phylogeny
taxonomy genome-assembly phylogeny microbial-taxonomy
Shell
•0•1•0•0•Updated Jan 17, 2024Jan 17, 2024

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