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openproblems-bio / task_label_projection Public

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Updates to repo - #34

#34

Merged

rcannood merged 13 commits into

mainopenproblems-bio/task_label_projection:mainfrom

updatesopenproblems-bio/task_label_projection:updatesCopy head branch name to clipboard

May 26, 2026

Conversation Commits13 (13)Checks Files changed

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Updates to repo#34
rcannood merged 13 commits into
mainfrom
updates

decrease batch size on ci

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Test on: pull_request 25

test / List components to test

test / Test (random_labels, control_methods, src/control_methods/random_labels/config.vsh.yaml, src/cont...

test / Test (majority_vote, control_methods, src/control_methods/majority_vote/config.vsh.yaml, src/cont...

test / Test (true_labels, control_methods, src/control_methods/true_labels/config.vsh.yaml, src/control_...

test / Test (process_dataset, data_processors, src/data_processors/process_dataset/config.vsh.yaml, src/...

test / Test (scimilarity_knn, methods, src/methods/scimilarity_knn/config.vsh.yaml, src/methods/scimilar...

test / Test (naive_bayes, methods, src/methods/naive_bayes/config.vsh.yaml, src/methods/naive_bayes/, py...

test / Test (scanvi, methods, src/methods/scanvi/config.vsh.yaml, src/methods/scanvi/, python_script, me...

test / Test (mlp, methods, src/methods/mlp/config.vsh.yaml, src/methods/mlp/, python_script, methods/mlp)

test / Test (xgboost, methods, src/methods/xgboost/config.vsh.yaml, src/methods/xgboost/, python_script,...

test / Test (scimilarity, methods, src/methods/scimilarity/config.vsh.yaml, src/methods/scimilarity/, py...

test / Test (scgpt_finetuned, methods, src/methods/scgpt_finetuned/config.vsh.yaml, src/methods/scgpt_fi...

test / Test (scanvi_scarches, methods, src/methods/scanvi_scarches/config.vsh.yaml, src/methods/scanvi_s...

test / Test (geneformer, methods, src/methods/geneformer/config.vsh.yaml, src/methods/geneformer/, pytho...

test / Test (knn, methods, src/methods/knn/config.vsh.yaml, src/methods/knn/, python_script, methods/knn)

test / Test (singler, methods, src/methods/singler/config.vsh.yaml, src/methods/singler/, r_script, meth...

test / Test (cellmapper_linear, methods, src/methods/cellmapper_linear/config.vsh.yaml, src/methods/cell...

test / Test (scgpt_zeroshot, methods, src/methods/scgpt_zeroshot/config.vsh.yaml, src/methods/scgpt_zero...

test / Test (uce, methods, src/methods/uce/config.vsh.yaml, src/methods/uce/, python_script, methods/uce)

test / Test (scprint, methods, src/methods/scprint/config.vsh.yaml, src/methods/scprint/, python_script,...

test / Test (seurat_transferdata, methods, src/methods/seurat_transferdata/config.vsh.yaml, src/methods/...

test / Test (logistic_regression, methods, src/methods/logistic_regression/config.vsh.yaml, src/methods/...

test / Test (cellmapper_scvi, methods, src/methods/cellmapper_scvi/config.vsh.yaml, src/methods/cellmapp...

test / Test (f1, metrics, src/metrics/f1/config.vsh.yaml, src/metrics/f1/, python_script, metrics/f1)

test / Test (accuracy, metrics, src/metrics/accuracy/config.vsh.yaml, src/metrics/accuracy/, python_scri...

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