Issues

• java.util.regex.PatternSyntaxException: Unescaped trailing backslash near index 1

  ome/ZarrReader#112 · Filter by author Rylern opened on Sep 12, 2025
  2

• remote zarr require s3 to be in the URI

  ome/ZarrReader#109 · Filter by author psobolewskiPhD opened on Apr 29, 2025
  7

• Retrieve label names

  ome/ZarrReader#108 · Filter by author dominikl opened on Apr 17, 2025
  1

• ZarrReader doesn't read zarrs without top-level 'series'

  ome/ZarrReader#99 · Filter by author dominikl opened on Oct 28, 2024
  6

• Multiple PlateAcquisitions: Images in wrong Wells

  ome/ZarrReader#96 · Filter by author will-moore opened on Sep 6, 2024
  1

• java.lang.ClassCastException on ZARR import

  ome/ZarrReader#94 · Filter by author jo-mueller opened on Aug 2, 2024
  8

• Issue with the Microservices when using the OMEZarrReader build from PR 82

  ome/ZarrReader#83 · Filter by author khaledk2 opened on Apr 2, 2024

• Index Out Of Bounds when importing to OMERO docker

  ome/ZarrReader#77 · Filter by author pwalczysko opened on Jan 25, 2024

• blosc problem on import of ome.zarr into OMERO

  ome/ZarrReader#76 · Filter by author pwalczysko opened on Jan 23, 2024
  3

• Future API updates

  ome/ZarrReader#68 · Filter by author dgault opened on Dec 7, 2023

• Deps missing from B-F update site

  ome/ZarrReader#61 · Filter by author joshmoore opened on Aug 22, 2023
  1

  

• ClassCastException when parsing acqusition start time

  ome/ZarrReader#55 · Filter by author dgault opened on Jun 12, 2023
  1

• Try to reproduce Well reordering issue with Fileset swapping

  ome/ZarrReader#52 · Filter by author will-moore opened on Apr 24, 2023
  6

• Document blosc requirement

  ome/ZarrReader#46 · Filter by author joshmoore opened on Jan 17, 2023

• Multiple multiscales

  ome/ZarrReader#44 · Filter by author will-moore opened on Nov 7, 2022
  6

• Fail on import of a plate

  ome/ZarrReader#43 · Filter by author pwalczysko opened on Nov 1, 2022
  1

• NGFF Plate import - slow and OOM due to many files

  ome/ZarrReader#40 · Filter by author will-moore opened on Sep 9, 2022
  4

• Import of zarr is slower

  ome/ZarrReader#37 · Filter by author pwalczysko opened on Jun 1, 2022
  1

• naming of images in omero

  ome/ZarrReader#36 · Filter by author pwalczysko opened on Jun 1, 2022
  3

• Test xarray compatible datasets

  ome/ZarrReader#35 · Filter by author joshmoore opened on May 26, 2022
  1

  

• Integration with Bio-Formats

  ome/ZarrReader#32 · Filter by author sbesson opened on May 2, 2022

• Detection of files not inside the zarr folder if nested into another .zarr folder

  ome/ZarrReader#26 · Filter by author pwalczysko opened on Apr 7, 2022
  9

• Multi-file images do not import correctly if nested in a .zarr folder

  ome/ZarrReader#25 · Filter by author pwalczysko opened on Apr 7, 2022
  9

• Incorrect handling of images with labels

  ome/ZarrReader#18 · Filter by author sbesson opened on Mar 14, 2022

• OS X arm64 support (jna dependency)

  ome/ZarrReader#16 · Filter by author sbesson opened on Mar 14, 2022