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57 workflow runs

57 workflow runs

ngs_bits_build in bam_qc subworkflow nf-core CI #57: Commit 5bb2113 pushed by number-25

3m 49s dev

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fixing trace_timestamp wording, final charm.... nf-core CI #56: Commit 8b900e0 pushed by number-25

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fixing trace_timestamp wording nf-core CI #55: Commit 7b5d628 pushed by number-25

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replaced trace_timestamp function with https://github.com/nextflow-io… nf-core CI #54: Commit 0004fb1 pushed by number-25

3m 39s dev

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replaced trace_timestamp function with https://github.com/nextflow-io… nf-core CI #53: Commit 1a6cfb8 pushed by number-25

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removed check_max() function and replaced with resourceLimits directive nf-core CI #52: Commit 9de4be2 pushed by number-25

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Update ci.yml - from 24.10.0 to 25.10.10 NXF_VER nf-core CI #51: Commit 6501cee pushed by number-25

3m 16s dev

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added docs about which modules are skipped when mapping to transcript… nf-core CI #50: Commit ed67048 pushed by number-25

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finished all inputs testing, getting closer to master release, few mo… nf-core CI #49: Commit b0d7be1 pushed by number-25

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fixing up channel logic, doing more tests nf-core CI #48: Commit 0dd79b6 pushed by number-25

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workflow tweaks nf-core CI #47: Commit 4a1a1cd pushed by number-25

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appears that sylph-tax is functional, isoquant taking far too long on… nf-core CI #46: Commit 76779cc pushed by number-25

2m 58s dev

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toying more with sylph-tax, rejigging main workflow.nf nf-core CI #45: Commit 22c587b pushed by number-25

2m 21s dev

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testing bam input and mapping to transcriptome nf-core CI #44: Commit 7881bd6 pushed by number-25

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getting closer to testing sylph out, need to index unmapped bam and c… nf-core CI #43: Commit f9c5123 pushed by number-25

2m 51s dev

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adding in sylph profiling of unmapped reads, still much to do nf-core CI #42: Commit 92f5838 pushed by number-25

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fixing bam inputs nf-core CI #41: Commit 2006a41 pushed by number-25

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mapping to transcriptome tested on full size dataset, bam_input on fu… nf-core CI #40: Commit 83ecfc0 pushed by number-25

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successfully tested mapping to transcriptome on minmimal test dataset… nf-core CI #39: Commit 992461c pushed by number-25

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included code to allow for the mapping to the transcriptome, as well … nf-core CI #38: Commit 3bbe235 pushed by number-25

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Update usage.md nf-core CI #37: Commit f3d0390 pushed by number-25

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Update README.md nf-core CI #36: Commit 07af139 pushed by number-25

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validateParams is working, nf-schema plugins are working nf-core CI #35: Commit 951dacc pushed by number-25

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first push of the year, testing out a full dataset using gzipped inpu… nf-core CI #34: Commit 1677f70 pushed by number-25

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new version of bambu added into module, not tested yet within worklfo… nf-core CI #33: Commit 549d3b3 pushed by number-25

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