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Pull requests: nf-core/tools

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Pull requests list

nextflow source CI: set up uv
#4208 opened Apr 22, 2026 by ewels Member Loading…
Update astral-sh/setup-uv action to v8
#4207 opened Apr 22, 2026 by renovate Bot Loading…
1 task
2
fix(lint): use correct config key zenodo_release instead of zenodo_doi
#4201 opened Apr 18, 2026 by MasterOfFeelingFish Loading…
1
2
Lock file maintenance
#4198 opened Apr 17, 2026 by renovate Bot Loading…
1 task
2
Update pre-commit hook pre-commit/mirrors-mypy to v1.20.1 - abandoned
#4197 opened Apr 17, 2026 by renovate Bot Loading…
1 task
3
Update pre-commit hook astral-sh/uv-pre-commit to v0.11.7 - abandoned
#4196 opened Apr 17, 2026 by renovate Bot Loading…
1 task
3
Update dependency textual to v8.2.3
#4194 opened Apr 17, 2026 by renovate Bot Loading…
1 task
2
Update dependency prettier to v3.8.2 - abandoned
#4193 opened Apr 17, 2026 by renovate Bot Loading…
1 task
3
Update dependency prettier to v3.8.2
#4192 opened Apr 17, 2026 by renovate Bot Loading…
1 task
2
Update actions/upload-artifact digest to 043fb46
#4184 opened Apr 11, 2026 by renovate Bot Loading…
1 task
3
Bump cryptography from 46.0.4 to 46.0.7 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#4181 opened Apr 8, 2026 by dependabot Bot Loading…
Fix: Issue #4173 awaiting-changes Needs changes after a review. Remove label when ready to be reviewed again. awaiting-feedback
#4174 opened Apr 4, 2026 by sonusonukgupta-gif Loading…
1
Bump aiohttp from 3.13.3 to 3.13.4 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#4168 opened Apr 1, 2026 by dependabot Bot Loading…
1
[DO NOT MERGE] test esm version of setup-nf-test [skip changelog]
#4164 opened Apr 1, 2026 by mashehu Contributor Loading…
2
Update dependency setuptools to v82
#4154 opened Mar 31, 2026 by renovate Bot Loading…
1 task
1
Bump pygments from 2.19.2 to 2.20.0 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#4149 opened Mar 30, 2026 by dependabot Bot Loading…
1
Request org details to fill in more template fields
#4146 opened Mar 29, 2026 by muffato Member • Draft
4 tasks
4.1.0
@muffato
12
Bump requests from 2.32.5 to 2.33.0 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#4136 opened Mar 26, 2026 by dependabot Bot Loading…
1
Bump pyjwt from 2.10.1 to 2.12.0 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#4120 opened Mar 14, 2026 by dependabot Bot Loading…
1
added "auto process" screen and extracted labels/names from nf
#4117 opened Mar 13, 2026 by imkhoibui Loading…
4 tasks
1
template: workflow output for multiQC
#4093 opened Mar 6, 2026 by maxulysse Member Loading…
4 tasks
5.0.0
4
Fix incompatible Docker Daemon Version in Devcontainer
#4029 opened Feb 4, 2026 by JulianFlesch Contributor • Draft
4 tasks
1
TEMPLATE: Add bioconda channel to conda setup
#3987 opened Jan 19, 2026 by maxulysse Member Loading…
4 tasks
4
Escape original merge branch to compile regex
#3984 opened Jan 16, 2026 by rrahn Contributor Loading…
3 of 4 tasks
1
added helpful comment for common gotcha - prefix scoping
#3982 opened Jan 15, 2026 by ammaraziz Loading…
1 of 2 tasks
1
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