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Pull requests: nf-core/modules

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Pull requests list

feat(spikeinterface/sort): add module wrapping SpikeInterface 0.101.2 spike sorting
#11464 opened May 3, 2026 by olaflaitinen Member • Draft
8 of 12 tasks
Update rtn/tni to using the versions topic channel size/s
#11463 opened May 1, 2026 by mribeirodantas Member Loading…
14 of 17 tasks
@mribeirodantas
Update gamma/gamma to using the versions topic channel size/s
#11462 opened May 1, 2026 by mribeirodantas Member Loading…
14 of 17 tasks
1
@mribeirodantas
Update fq/generate to using the versions topic channel size/s
#11460 opened May 1, 2026 by mribeirodantas Member Loading…
14 of 17 tasks
1
@mribeirodantas
nf-core-module-dev bots updating hmmer tools: hmmbuild, hmmsearch, hmmalign to topic versions and latest standards size/l
#11458 opened May 1, 2026 by vagkaratzas Contributor Loading…
9 of 17 tasks
1
feat: allow bwa-mem to output sam format
#11457 opened May 1, 2026 by piplus2 Loading…
7 of 17 tasks
1
1
Update pre-commit hooks size/xs
#11453 opened May 1, 2026 by renovate Bot Loading…
2 tasks
Update dotnet monorepo size/xs
#11452 opened May 1, 2026 by renovate Bot Loading…
2 tasks
Update whamg: topic versions, stub block, sanitizeOutput
#11450 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
2
Update wfmash: topic versions, stub block, sanitizeOutput
#11449 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
1
Update smoothxg: topic versions, stub block, sanitizeOutput
#11448 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
3
Update seqsero2: topic versions, stub block, sanitizeOutput
#11446 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
1
Update salsa2: topic versions, stub block, sanitizeOutput
#11445 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
2
Update mygene: topic versions, stub block, sanitizeOutput
#11441 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
3
Update fasttree: topic versions, stub block, sanitizeOutput
#11439 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
1
Add stub block and migrate plasmidid to topic channels
#11438 opened Apr 30, 2026 by HReed1 Contributor Loading…
1
Add stub block and migrate pairix to topic channels
#11437 opened Apr 30, 2026 by HReed1 Contributor Loading…
2
fix(kofamscan): migrate to topic versions and add stub testing
#11436 opened Apr 30, 2026 by HReed1 Contributor Loading…
8 tasks done
2
feat(islandpath): migrate to topic: versions tuple
#11435 opened Apr 30, 2026 by HReed1 Contributor Loading…
4
feat(optitype): add stub block and migrate to topic channel versions
#11420 opened Apr 29, 2026 by HReed1 Contributor Loading…
@HReed1
5
feat(maltextract): add stub block and migrate to topic channel versions
#11419 opened Apr 29, 2026 by HReed1 Contributor Loading…
4
feat(medaka): add stub block and migrate to topic channel versions
#11417 opened Apr 29, 2026 by HReed1 Contributor Loading…
3
feat(hicap): migrate to topic channel versions (stub block already present)
#11416 opened Apr 29, 2026 by HReed1 Contributor Loading…
3
feat(haplocheck): migrate to topic channel versions (stub block already present)
#11415 opened Apr 29, 2026 by HReed1 Contributor Loading…
1
feat(flash): migrate to topic channel versions (stub block already present)
#11414 opened Apr 29, 2026 by HReed1 Contributor Loading…
1
ProTip! Exclude everything labeled bug with -label:bug.