Important! Template update for nf-core/tools v4.0.3 - #208
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This reverts commit 376973f.
* Template update for nf-core/tools version 3.2.1 * Template update for nf-core/tools version 3.3.1 * merge template 3.3.1 - fix linting * update pre-commit * merge template 3.3.1 - fix linting * pre-commit config? * pre-commit config? * reinstall links * try larger runner * smaller run, disable bloom filter for hifiasm test * updated test snapshot * updated test snapshot * update nftignore * update nftignore * update nftignore * update nftignore * update nftignore * update nftignore * update nftignore * update nftignore * update nftignore * Update .github/actions/nf-test/action.yml Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com> * Update docs/output.md Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com> * remove .nf-test.log --------- Co-authored-by: Niklas Schandry <niklas@bio.lmu.de> Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
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Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 4.0.3. For more documentation on how to update your pipeline, please see the Synchronisation documentation. |
❌ nf-test failed with latest Nextflow versionNote Tests with Nextflow's latest version failed but it will not cause a CI workflow failure.
See the full run for details. |
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@nf-core-bot fix linting |
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Version
4.0.3of nf-core/tools has just been released with updates to the nf-core template. For more details, check out the blog post: https://nf-co.re/advisories/pr-comment-workflow-vulnerabilityPlease make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the
nf-core-template-merge-4.0.3branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.For instructions on how to merge this PR, please see the template sync documentation.
For more information about this release of nf-core/tools, please see the
v4.0.3release page.Note
Since nf-core/tools 3.5.0, older template update PRs will not be automatically closed, but will remain open in your pipeline repository. Older template PRs will be automatically closed once a newer template PR has been merged.