morris-lab

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1. CellOracle CellOracle Public

   This is the alpha version of the CellOracle package

   Python 484 74

2. Capybara Capybara Public

   Capybara: A computational tool to measure cell identity and fate transitions

   R 63 10

3. BiddyetalWorkflow BiddyetalWorkflow Public

   This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.

   R 33 9

4. CellTagR CellTagR Public

   This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.

   R 23 8

5. Colony-counter Colony-counter Public

   Python package for the quantificatin of number of colonies

   Jupyter Notebook 23 12

6. newCloneCalling newCloneCalling Public

   Repository detailing updated allowlisting and clonal analysis workflow

   Jupyter Notebook 11