GitHub - microbioinformatic/Co-PATHOgenex: Supporting scripts and files for R shiny app Co-PATHOgenex

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 12 Commits
ACHX_Bs_1Bs_2Bs_3_UP.csv		ACHX_Bs_1Bs_2Bs_3_UP.csv
ACHX_Li_1Li_2Li_3Oxs_2_UP.csv		ACHX_Li_1Li_2Li_3Oxs_2_UP.csv
ACHX_Li_1Li_2Li_3_UP.csv		ACHX_Li_1Li_2Li_3_UP.csv
ACHX_Mig_1Mig_2Mig_3Ns_1Ns_2_UP.csv		ACHX_Mig_1Mig_2Mig_3Ns_1Ns_2_UP.csv
ACHX_Mig_1Mig_2Mig_3_UP.csv		ACHX_Mig_1Mig_2Mig_3_UP.csv
ACHX_Mig_1Nd_1Nd_2_UP_Oss_1Oss_3_DOWN.csv		ACHX_Mig_1Nd_1Nd_2_UP_Oss_1Oss_3_DOWN.csv
ACHX_Mig_2Mig_3_UP_As_1Nd_1Nd_2_DOWN.csv		ACHX_Mig_2Mig_3_UP_As_1Nd_1Nd_2_DOWN.csv
ACHX_Nd_1Nd_2Nd_3_UP.csv		ACHX_Nd_1Nd_2Nd_3_UP.csv
ACHX_Ns_1Ns_2Ns_3_UP.csv		ACHX_Ns_1Ns_2Ns_3_UP.csv
ACHX_Oss_1Oss_2Oss_3_UP.csv		ACHX_Oss_1Oss_2Oss_3_UP.csv
ACHX_Oss_2Tm_1Tm_2Tm_3_UP.csv		ACHX_Oss_2Tm_1Tm_2Tm_3_UP.csv
ACHX_Oss_2_UP.csv		ACHX_Oss_2_UP.csv
ACHX_Oxs_1Oxs_2Oxs_3_DOWN.csv		ACHX_Oxs_1Oxs_2Oxs_3_DOWN.csv
ACHX_Sp_1Sp_2Sp_3_UP.csv		ACHX_Sp_1Sp_2Sp_3_UP.csv
ACHX_Tm_1Tm_2Tm_3_UP.csv		ACHX_Tm_1Tm_2Tm_3_UP.csv
ACHX_Tm_1Tm_2Tm_3_UP_Ctrl_1_DOWN.csv		ACHX_Tm_1Tm_2Tm_3_UP_Ctrl_1_DOWN.csv
ACHX_non_correlated.csv		ACHX_non_correlated.csv
ACIB_Li_1Li_2Li_3Oxs_1Oxs_2Oxs_3_UP.csv		ACIB_Li_1Li_2Li_3Oxs_1Oxs_2Oxs_3_UP.csv
ACIB_Li_1_UP_Mig_1Sp_1Sp_2Sp_3_DOWN.csv		ACIB_Li_1_UP_Mig_1Sp_1Sp_2Sp_3_DOWN.csv
ACIB_Mig_2Mig_3_UP_Mig_1Nd_1Nd_3Sp_1Sp_2Sp_3_DOWN.csv		ACIB_Mig_2Mig_3_UP_Mig_1Nd_1Nd_3Sp_1Sp_2Sp_3_DOWN.csv
ACIB_Nd_1Nd_2Nd_3_UP.csv		ACIB_Nd_1Nd_2Nd_3_UP.csv
ACIB_Oss_1Oss_2Oss_3_UP.csv		ACIB_Oss_1Oss_2Oss_3_UP.csv
ACIB_Oxs_1Oxs_2Oxs_3_UP.csv		ACIB_Oxs_1Oxs_2Oxs_3_UP.csv
ACIB_Oxs_2_UP_Mig_1Sp_1Sp_2Sp_3_DOWN.csv		ACIB_Oxs_2_UP_Mig_1Sp_1Sp_2Sp_3_DOWN.csv
ACIB_Vic_1Vic_2_UP_Mig_1Sp_1Sp_2Sp_3_DOWN.csv		ACIB_Vic_1Vic_2_UP_Mig_1Sp_1Sp_2Sp_3_DOWN.csv
ACIB_Vic_1_UP.csv		ACIB_Vic_1_UP.csv
ACIB_non_correlated.csv		ACIB_non_correlated.csv
AGGA_Bs_1Bs_2Bs_3Nd_1_UP.csv		AGGA_Bs_1Bs_2Bs_3Nd_1_UP.csv
AGGA_Bs_1Bs_2Bs_3Oxs_3_UP_Nd_2_DOWN.csv		AGGA_Bs_1Bs_2Bs_3Oxs_3_UP_Nd_2_DOWN.csv
AGGA_Bs_1Bs_2Bs_3_UP.csv		AGGA_Bs_1Bs_2Bs_3_UP.csv
AGGA_Bs_1Bs_2Bs_3_UP_Vic_1_DOWN.csv		AGGA_Bs_1Bs_2Bs_3_UP_Vic_1_DOWN.csv
AGGA_Bs_1Vic_1Vic_2Vic_3_UP.csv		AGGA_Bs_1Vic_1Vic_2Vic_3_UP.csv
AGGA_Li_1Li_2Li_3Nd_1Nd_3Oxs_1_UP.csv		AGGA_Li_1Li_2Li_3Nd_1Nd_3Oxs_1_UP.csv
AGGA_Li_1Li_2Li_3_UP.csv		AGGA_Li_1Li_2Li_3_UP.csv
AGGA_Li_1Ns_1Ns_2Ns_3_UP.csv		AGGA_Li_1Ns_1Ns_2Ns_3_UP.csv
AGGA_Mig_1Mig_2Mig_3_UP_Nd_1Nd_2Nd_3Tm_2_DOWN.csv		AGGA_Mig_1Mig_2Mig_3_UP_Nd_1Nd_2Nd_3Tm_2_DOWN.csv
AGGA_Mig_2Mig_3Sp_1Sp_2Sp_3_UP.csv		AGGA_Mig_2Mig_3Sp_1Sp_2Sp_3_UP.csv
AGGA_Mig_2Vic_3_UP_Ns_3Oxs_3_DOWN.csv		AGGA_Mig_2Vic_3_UP_Ns_3Oxs_3_DOWN.csv
AGGA_Nd_1Nd_2Nd_3_UP.csv		AGGA_Nd_1Nd_2Nd_3_UP.csv
AGGA_Nd_1Nd_2Nd_3_UP_Ns_2_DOWN.csv		AGGA_Nd_1Nd_2Nd_3_UP_Ns_2_DOWN.csv
AGGA_Nd_2Nd_3Vic_1Vic_3_UP_Bs_2_DOWN.csv		AGGA_Nd_2Nd_3Vic_1Vic_3_UP_Bs_2_DOWN.csv
AGGA_Oss_1Oss_2Oss_3_UP.csv		AGGA_Oss_1Oss_2Oss_3_UP.csv
AGGA_Oxs_1Oxs_2Oxs_3_UP.csv		AGGA_Oxs_1Oxs_2Oxs_3_UP.csv
AGGA_Tm_1Tm_2Tm_3_UP.csv		AGGA_Tm_1Tm_2Tm_3_UP.csv
AGGA_Vic_1Vic_2Vic_3_UP.csv		AGGA_Vic_1Vic_2Vic_3_UP.csv
AGGA_Vic_1Vic_2Vic_3_UP_Ns_2_DOWN.csv		AGGA_Vic_1Vic_2Vic_3_UP_Ns_2_DOWN.csv
AGGA_non_correlated.csv		AGGA_non_correlated.csv
Achromobacter_xylosoxidans_SOLR_R_input.csv		Achromobacter_xylosoxidans_SOLR_R_input.csv
Acinetobacter_baumannii_R_input.csv		Acinetobacter_baumannii_R_input.csv
Aggregatibacter_actinomycetemcomitans_R_input.csv		Aggregatibacter_actinomycetemcomitans_R_input.csv
Annotations_core.csv		Annotations_core.csv
BBURG_Ctrl_1Li_1Li_2_UP.csv		BBURG_Ctrl_1Li_1Li_2_UP.csv
BBURG_Nd_1Nd_2Nd_3_UP_Sp_1Sp_3_DOWN.csv		BBURG_Nd_1Nd_2Nd_3_UP_Sp_1Sp_3_DOWN.csv
BBURG_Oss_1Oss_2Oss_3_UP.csv		BBURG_Oss_1Oss_2Oss_3_UP.csv
BBURG_Oss_1Oss_2Sp_1Sp_2Sp_3_UP.csv		BBURG_Oss_1Oss_2Sp_1Sp_2Sp_3_UP.csv
BBURG_Oxs_1Oxs_3_UP_Nd_3Sp_2_DOWN.csv		BBURG_Oxs_1Oxs_3_UP_Nd_3Sp_2_DOWN.csv
BBURG_Sp_1Sp_2Sp_3_UP.csv		BBURG_Sp_1Sp_2Sp_3_UP.csv
BBURG_Tm_1Tm_2Tm_3_UP_Li_1Li_2_DOWN.csv		BBURG_Tm_1Tm_2Tm_3_UP_Li_1Li_2_DOWN.csv
BBURG_non_correlated.csv		BBURG_non_correlated.csv
BURK_As_1As_2As_3_UP_Sp_1_DOWN.csv		BURK_As_1As_2As_3_UP_Sp_1_DOWN.csv
BURK_As_2Oxs_3_UP_Sp_1Sp_2Sp_3_DOWN.csv		BURK_As_2Oxs_3_UP_Sp_1Sp_2Sp_3_DOWN.csv
BURK_Li_1Li_2Li_3_UP.csv		BURK_Li_1Li_2Li_3_UP.csv
BURK_Li_1Li_2Nd_1_UP_Oss_1Oss_2Oss_3_DOWN.csv		BURK_Li_1Li_2Nd_1_UP_Oss_1Oss_2Oss_3_DOWN.csv
BURK_Mig_1Mig_2Mig_3Oxs_3_UP.csv		BURK_Mig_1Mig_2Mig_3Oxs_3_UP.csv
BURK_Mig_1Mig_2Mig_3Sp_1Sp_2Sp_3_UP.csv		BURK_Mig_1Mig_2Mig_3Sp_1Sp_2Sp_3_UP.csv
BURK_Mig_1Mig_2Mig_3_UP.csv		BURK_Mig_1Mig_2Mig_3_UP.csv
BURK_Nd_1Nd_2Nd_3Tm_2Tm_3_UP.csv		BURK_Nd_1Nd_2Nd_3Tm_2Tm_3_UP.csv
BURK_Nd_1Nd_2Nd_3_UP.csv		BURK_Nd_1Nd_2Nd_3_UP.csv
BURK_Nd_1Nd_2Nd_3_UPsalmon.csv		BURK_Nd_1Nd_2Nd_3_UPsalmon.csv
BURK_Oss_1Oss_2Oss_3_UP.csv		BURK_Oss_1Oss_2Oss_3_UP.csv
BURK_Oxs_1Oxs_2Oxs_3_UP.csv		BURK_Oxs_1Oxs_2Oxs_3_UP.csv
BURK_Sp_1Sp_2Sp_3Tm_1Tm_2Tm_3_UP.csv		BURK_Sp_1Sp_2Sp_3Tm_1Tm_2Tm_3_UP.csv
BURK_Sp_1Sp_2Sp_3_UP.csv		BURK_Sp_1Sp_2Sp_3_UP.csv
BURK_Tm_1Tm_2Tm_3_UP.csv		BURK_Tm_1Tm_2Tm_3_UP.csv
BURK_Vic_1Vic_2Vic_3_UP.csv		BURK_Vic_1Vic_2Vic_3_UP.csv
BURK_non_correlated.csv		BURK_non_correlated.csv
Borrelia_burgdorferi_B31_R_input2.csv		Borrelia_burgdorferi_B31_R_input2.csv
Burkholderia_pseudomallei_R_input2.csv		Burkholderia_pseudomallei_R_input2.csv
Campy_Bs_1Bs_2Bs_3_UP.csv		Campy_Bs_1Bs_2Bs_3_UP.csv
Campy_Bs_3Tm_1Tm_2_UP.csv		Campy_Bs_3Tm_1Tm_2_UP.csv
Campy_Ctrl_1Li_1Li_2_UP_Tm_2_DOWN.csv		Campy_Ctrl_1Li_1Li_2_UP_Tm_2_DOWN.csv
Campy_Li_1Li_2Li_3_UP.csv		Campy_Li_1Li_2Li_3_UP.csv
Campy_Li_1Li_2Oxs_1Oxs_2Oxs_3_UP.csv		Campy_Li_1Li_2Oxs_1Oxs_2Oxs_3_UP.csv
Campy_Li_2_UP_Sp_1Sp_2_DOWN.csv		Campy_Li_2_UP_Sp_1Sp_2_DOWN.csv
Campy_Nd_1Nd_2Nd_3_UP.csv		Campy_Nd_1Nd_2Nd_3_UP.csv
Campy_Oxs_1Oxs_2Oxs_3_UP.csv		Campy_Oxs_1Oxs_2Oxs_3_UP.csv
Campy_Sp_1Sp_2Sp_3_UP.csv		Campy_Sp_1Sp_2Sp_3_UP.csv
Campy_Sp_1Sp_2_UP_Nd_1Nd_3Oxs_2Oxs_3_DOWN.csv		Campy_Sp_1Sp_2_UP_Nd_1Nd_3Oxs_2Oxs_3_DOWN.csv
Campy_non_correlated.csv		Campy_non_correlated.csv
Campylobacter_jejuni_R_input.csv		Campylobacter_jejuni_R_input.csv
ENTFA_As_1As_2As_3_UP.csv		ENTFA_As_1As_2As_3_UP.csv
ENTFA_As_1As_2Tm_1Tm_2Tm_3_UP.csv		ENTFA_As_1As_2Tm_1Tm_2Tm_3_UP.csv
ENTFA_Bs_1Bs_2Bs_3_UP.csv		ENTFA_Bs_1Bs_2Bs_3_UP.csv
ENTFA_Li_1Li_2Li_3_UP.csv		ENTFA_Li_1Li_2Li_3_UP.csv
ENTFA_Mig_1Mig_2Mig_3Sp_1Sp_2Sp_3_UP.csv		ENTFA_Mig_1Mig_2Mig_3Sp_1Sp_2Sp_3_UP.csv
ENTFA_Mig_1Mig_2Mig_3Vic_1Vic_2Vic_3_UP.csv		ENTFA_Mig_1Mig_2Mig_3Vic_1Vic_2Vic_3_UP.csv
ENTFA_Mig_1Mig_2Mig_3_UP_Nd_2_DOWN.csv		ENTFA_Mig_1Mig_2Mig_3_UP_Nd_2_DOWN.csv
ENTFA_Nd_1Nd_2Nd_3Oxs_1Oxs_2Oxs_3_UP_Vic_1Vic_2Vic_3_DOWN.csv		ENTFA_Nd_1Nd_2Nd_3Oxs_1Oxs_2Oxs_3_UP_Vic_1Vic_2Vic_3_DOWN.csv
ENTFA_Nd_1Nd_2Nd_3_DOWN.csv		ENTFA_Nd_1Nd_2Nd_3_DOWN.csv
ENTFA_Nd_1Nd_2Nd_3_UP.csv		ENTFA_Nd_1Nd_2Nd_3_UP.csv