tHMM is a Python3 package for clustering, visualizing, and analyzing data in the form of lineage trees. This work is now published in Communications Biology https://www.nature.com/articles/s42003-022-04208-9
$ git clone https://github.com/meyer-lab/tHMM.gitIt takes a few seconds to clone the repository.
This package is supported on macOS and Linux systems.
Dependencies are managed with uv. Install the environment and dependencies by running:
$ uv syncPlease find the documentation at https://meyer-lab.github.io/tHMM/.
This project is covered under the MIT License.