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More training docs and better Saluki defaults #1

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isaacvock merged 2 commits into from
Jul 24, 2026
Merged

More training docs and better Saluki defaults #1

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More training docs and better Saluki defaults
isaacvock Jul 24, 2026
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isaacvock Jul 24, 2026
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6 changes: 4 additions & 2 deletions docs/index.rst
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Expand Up @@ -23,13 +23,15 @@ Start here

See :doc:`installation` for the smallest install that covers your use case.
The :doc:`usage` guide walks through Saluki and MPRA projects from input tables
through cross-validation and interpretation. Use the :doc:`api` reference when
calling TranscriptML from Python.
through cross-validation and interpretation. The :doc:`training_configuration`
guide describes every Saluki, LegNet, and shared training option. Use the
:doc:`api` reference when calling TranscriptML from Python.

.. toctree::
:maxdepth: 2
:caption: Contents

installation
usage
training_configuration
api
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