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@jcm-sci

jcm-sci

Decision support and principled inference for partially observed systems across earth, environmental, and health sciences — determining what actions to take, what experiments to run, and what measurements are worth collecting when interventions are costly and uncertainty is unavoidable.

Website · Publications · Projects

Focus Areas

  • Decision support under partial observability — surveillance design, forecasting pipelines, intervention evaluation, resource allocation
  • Model criticism & evaluation — structured observables, Pareto-optimal configuration selection, Bayesian stacking, proper scoring rules
  • Scientific AI/ML — physics-embedded surrogates, lawful learning, generative model design
  • Operator-partitioned solvers — IMEX/PDE operator splitting, trait-structured dynamical systems
  • Bayesian latent variable models — variational PCA, posterior predictive testing, rank selection
  • Operational forecasting — infectious disease scenario modeling, ensemble calibration, intervention timing

Packages

Package Language Description
model-criticism Python Observable-based model evaluation, Pareto optimization, Bayesian stacking
ModelCriticism.jl Julia Model evaluation harness wrapping Metaheuristics.jl, ParetoSmooth.jl, QuasiMonteCarlo.jl, GlobalSensitivity.jl

Related Work (other orgs)

Package Org Description
VBPCApy yoavram-lab Variational Bayesian PCA with missing-data support
pp-eigentest yoavram-lab Posterior predictive eigenvalue rank testing
op_engine ACCIDDA Operator-partitioned solver (Python)
op_system ACCIDDA System specification compiler (Python)
flepimop2 ACCIDDA Modular epidemic modeling and simulation pipeline

Popular repositories Loading

  1. .github .github Public

    Organization profile and community health files

  2. python-package-template python-package-template Public template

    Template for Python scientific packages (uv + ruff + just + GitHub Actions)

    Just

  3. julia-package-template julia-package-template Public template

    Template for Julia scientific packages (justfile + GitHub Actions CI)

    Just

  4. model-criticism model-criticism Public

    Observable-based model evaluation, Pareto optimization, and Bayesian stacking for scientific model criticism

    Python

  5. ModelCriticism.jl ModelCriticism.jl Public

    Observable-based model evaluation, Pareto optimization, and Bayesian stacking for scientific model criticism (Julia)

    Just

  6. OpEngine.jl OpEngine.jl Public

    Operator-partitioned numerical solver — ODE + IMEX/PDE operator splitting (Julia)

    Just

Repositories

Showing 7 of 7 repositories

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