Reduce number of FMMs - #195

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isuruf wants to merge 157 commits into

inducer:mainfrom

isuruf:stokes_biharmonic3

Commits on Mar 31, 2023

Stokes/Elasticity using biharmonic/Laplace
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65d126c
Point sumpy back to main
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e4d4e58
Add unit tests for pytential.symbolic.pde.system_utils
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f19dccb
Throw RuntimeError
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25a14cb
Double back-ticks around IntG
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f492f6e
typing
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ceea82c
Add an example to convert_target_transformation_to_source
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8cc7b24
use simpler expression
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2652ace
Add abstractmethod
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81e449a
abstractmethod
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3cf612c
simplify loops
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56755c8
remove unnecessary code
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4683196
list -> tuple
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0e1a9b3
Pass base_kernel in WrapperNaiveOrBiharmonic
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52b6beb
No abstractmethod for apply_stress for now
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1626131
correct some typos to fix tests
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5f570f5
Fix refactor
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b0dc563
Turn StokesletWrapper into a function
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111b28b
more testing
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95466cc
Fix tests for sympy
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ae4413a
rewrite_using_base_kernel for pressure as well
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b6d4b14
test PDE
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da05129
disable biharmonic 3D
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edc6d90
update warning message
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7afaf0d
raise NotImplmentedError when base_kernel is not given
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d397563
laplace works just fine for 2D too
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d66bd64
check divergence too
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d62e336
test laplace 2d too
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95c06f0
remove pylint skips now that __new__ is not used anymore
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d7cd503
test elasticity too
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2658f8b
Update docs and remove unnecessary for loop
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216930c
no need of laplace kernel when nu == 0.5
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53ac31d
update copyright
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e0fc9ca
store the stresslet in StokesletWrapperYoshida
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7b3009a
nu default
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a05bcad
Use sym.SympyToPymbolicMapper
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55b81aa
consistent spacing
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1b1ce35
fix typo
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e24feaf
_get_kernel_expression -> _get_sympy_kernel_expression
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6474354
improved docstring
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580045c
Fix tuple types
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c93371d
improve docstring
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d803468
pep8 naming
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e16a4c0
explain 2D StokesletWrapperYoshida
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a4178cd
Fix typo
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54bc848
check that the kernel is a derivative when const != 0
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a9893f9
Add DOI link
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0f59312
Fix formatting
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8ccd343
Make Stokes be a child class of Elasticity
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1331e9e
restore apply_pressure and apply_stress
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911f42b
Fix inheritance
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f05e277
Fix docs
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1409766
More doc fixes
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879b278
doc internals
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7b92763
Fix formatting
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affd89d
lu_solve_with_expand -> lu_with_post_division_callback
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a74f619
Fix default source/target
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09c09d5
Use a different source/target
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a6f23a0
Fix setting geometry
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e3f61d6
document the assumption that potentials are smooth
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db0d2ff
explain the weights
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623ed44
get_int_g -> _get_int_g
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77a87af
simplify using sym.nodes
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6d505bc
use a better error message
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f3fa858
rename convert_int_g_to_base -> rewrite_int_g_using_base_kernel
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9c711ce
warning unknown target kernel
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75d485e
add type hints for chop and lu_with_post_division_callback
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2ac5f30
use sym.nodes
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1c95bc7
Use StokesletKernel when nu_sym == 0.5
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d710cd9
Use DEFAULT_SOURCE
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3a86bbc
Fix test
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0c0e651
Use _acf
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cfdd1a5
Stokeslet -> Elasticity
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7daeaac
No need to raise for abstractmethod
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8ec6583
say which unsupported dim
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57a1824
create_elasticity -> make_elasticity
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d5eaad3
Fix DOI links and add yoshida method to internals
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4d45815
Improve docs about assumptions

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926c524
Fix IntG in docs

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7167e6f
Fix IntG markup
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ba915a8
fix formatting in docstrings
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522021a
dataclass
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87c0e92
mu_sym -> mu
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5bfe80b
Use dataclasses
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51aa009
Use enum for method
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c5d9c35
make linter happy
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f2a9ad5
Use laplacian instead of laplace
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f5f508c
defaults to a variable named
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05b4d2c
refactor solve with lu
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49c6bd3
type annotate base_kernel
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bd98c02
warn if translation variant kernel is found and bail
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6d8039b
refactor terms
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0536475
fix incomplete refactor
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f74a020
improve commnet
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dd79bf9
integral -> convolution
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cb2ca1d
fix bad refactor
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70ad03e
pass through postprocess_division
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917dc45
use a data class for deriv relation
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53693d7
use a dataclass for LUFactorization
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88d4938
Fix type annotation
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b2befb4
fix tests
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5ac3ade
avoid creating IntGs with 0 densities
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9a92de3
fix too long line
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bb3424d
Try both solutions instead of relying on the symbolic backend
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ec9760c
reduce diff
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cca85fb
Add a comment about not having spatial constant mapping methods

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8a46f4b
fix bad merge
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86a516b
Update warning message

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1f6a49d
explain -1, -1, -1 and 0, 0, 0

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ae70ec2
operator -> wrapper
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13b46a5
-1 with size dim
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a604d07
List -> Sequence
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7190431
unit test for solve_from_lu
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80040fa
import Sequence
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2b591c8
Fix applying extra_deriv_dirs
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ee467cf
add a test for errors
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2c32cc3
formatting: 2 blank lines
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50df2a8
simplify matrix
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201822f
Check using calculus patch as well
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61349e6
describe the math
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684ec66
mention column of ones in A
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10e5221
fix typo
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79783f8
Fix misleading naming in test_stokes

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7d8ef25
Placate flake8-comprehensions

inducer
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7818049
Placate flake8-comprehensions again
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69931e7
fix typo
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180a464
add code to reduce and merge fmms
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4136c6a
introduce hashable_kernel_arg_value
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7fe98ae
fold duplicates in source kernels
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02e56b7
fix doctests
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3ef322a
Fix op_group_features
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e3959cd
add unit tests
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61be764
support timing_data in BoundExpression
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4f351c4
merge exprs by default in bind
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7e4a95d
simplify right factor
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02b3e55
don't fail if our method gives a bad answer
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8521560
Add MindlinOperator
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30c958b
add test for mindlin
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d9801cf
test that rewriting using biharmonic still gives 2 FMMs for C-image
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6cc3124
Don't simplify unnecessarily
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33049fd
fix test failures
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62230aa
verbose pytest
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61a8b5e
nsimplify before groebner
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4f8e460

Commits on Apr 4, 2023

Use the PDE
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0716f31
use a minimal genearting set
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79132c1
Use in_terms_of_generator instead of LUsolve
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e79243e
test factoring without PDE
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6480c5f

Commits on Apr 5, 2023

Use more of sympy's syzygy functionality
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edbbd20
comment on minimal_generating_set
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04f6836
fix for poly being zero
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b6b3e08
fix getting minimal generating set
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7c50cdc
fix tests
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5245ce2
debug
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7c0e850

Commits on Apr 6, 2023

add Fu et al method
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714da54
fix test for new pymbolic
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ce380e9
Fix big typo
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9c1fcb4

Commits on Jul 19, 2023

Merge branch 'main' into stokes_biharmonic3
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b900990