Adjust Import + id ranges

.gitignore

@@ -66,4 +66,4 @@ src/patterns/data/**/*.txt
 src/patterns/pattern_owl_seed.txt
 src/patterns/all_pattern_terms.txt
 
-# End of ODK-managed rules
+# End of ODK-managed rules

src/ontology/Makefile

@@ -10,7 +10,7 @@
 # More information: https://github.com/INCATools/ontology-development-kit/
 
 # Fingerprint of the configuration file when this Makefile was last generated
-CONFIG_HASH=                22b896ff37a2178cf683be4df092a84aca4cad6aac001f4a85792c7351452992
+CONFIG_HASH=                bfc9223094875f6270fa84b7327623c74b217980c60850a5c0942756ce12dfe9
 
 
 # ----------------------------------------
@@ -417,6 +417,25 @@ $(IMPORTDIR)/%_import.owl: $(MIRRORDIR)/%.owl $(IMPORTDIR)/%_terms.txt \
 
 .PRECIOUS: $(IMPORTDIR)/%_import.owl
 
+## Module for ontology: ms (slme)
+$(IMPORTDIR)/ms_import.owl: $(MIRRORDIR)/ms.owl $(IMPORTDIR)/ms_terms.txt $(IMPORTSEED) | all_robot_plugins
+	$(ROBOT) annotate --input $< --remove-annotations \
+		 odk:normalize --add-source true \
+		 extract --term-file $(IMPORTDIR)/ms_terms.txt $(T_IMPORTSEED) \
+		         --copy-ontology-annotations true --force true \
+		         --individuals include \
+		         --method STAR \
+		 remove $(foreach p, $(ANNOTATION_PROPERTIES), --term $(p)) \
+		        --term rdfs:label \
+		        --term IAO:0000115 \
+		        --term OMO:0002000 \
+		        --term-file $(IMPORTDIR)/ms_terms.txt $(T_IMPORTSEED) \
+		        --select complement --select annotation-properties \
+		 odk:normalize --base-iri http://purl.obolibrary.org/obo \
+		               --subset-decls true --synonym-decls true \
+		 repair --merge-axiom-annotations true \
+		 $(ANNOTATE_CONVERT_FILE)
+
 endif # IMP=true
 
 .PHONY: refresh-imports

src/ontology/camo-edit.owl

@@ -128,26 +128,31 @@ SubClassOf(<http://purl.obolibrary.org/obo/CAMO_0000009> <http://purl.obolibrary
 
 # Class: <http://purl.obolibrary.org/obo/CAMO_0000010> (Survey)
 
+AnnotationAssertion(dcterms:description <http://purl.obolibrary.org/obo/CAMO_0000010> "Data obtained from a survey or questionnaire given to a participant or their representative.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CAMO_0000010> "Survey"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/CAMO_0000010> <http://purl.obolibrary.org/obo/CAMO_0000009>)
 
 # Class: <http://purl.obolibrary.org/obo/CAMO_0000011> (Research Assessment)
 
+AnnotationAssertion(dcterms:description <http://purl.obolibrary.org/obo/CAMO_0000011> "Data obtained by research staff for the study.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CAMO_0000011> "Research Assessment"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/CAMO_0000011> <http://purl.obolibrary.org/obo/CAMO_0000009>)
 
 # Class: <http://purl.obolibrary.org/obo/CAMO_0000012> (Interview)
 
+AnnotationAssertion(dcterms:description <http://purl.obolibrary.org/obo/CAMO_0000012> "Data obtained directly by research staff examining the participant.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CAMO_0000012> "Interview"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/CAMO_0000012> <http://purl.obolibrary.org/obo/CAMO_0000011>)
 
 # Class: <http://purl.obolibrary.org/obo/CAMO_0000013> (Physical Examination)
 
+AnnotationAssertion(dcterms:description <http://purl.obolibrary.org/obo/CAMO_0000013> "Data obtained by research staff interviewing participants, representatives, or others.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CAMO_0000013> "Physical Examination"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/CAMO_0000013> <http://purl.obolibrary.org/obo/CAMO_0000011>)
 
 # Class: <http://purl.obolibrary.org/obo/CAMO_0000014> (Electronic Health Record)
 
+AnnotationAssertion(dcterms:description <http://purl.obolibrary.org/obo/CAMO_0000014> "Data obtained directly from an Electronic Health Record.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CAMO_0000014> "Electronic Health Record"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/CAMO_0000014> <http://purl.obolibrary.org/obo/CAMO_0000009>)
 
@@ -156,33 +161,39 @@ SubClassOf(<http://purl.obolibrary.org/obo/CAMO_0000014> <http://purl.obolibrary
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CAMO_0000015> "Asserter"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/CAMO_0000015> <http://purl.obolibrary.org/obo/CAMO_0000000>)
 
-# Class: <http://purl.obolibrary.org/obo/CAMO_0000016> (Investigator Asserted)
+# Class: <http://purl.obolibrary.org/obo/CAMO_0000016> (Research Staff Asserted)
 
-AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CAMO_0000016> "Investigator Asserted"@en)
+AnnotationAssertion(dcterms:description <http://purl.obolibrary.org/obo/CAMO_0000016> "Assertion made by research staff.")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CAMO_0000016> "Research Staff Asserted"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/CAMO_0000016> <http://purl.obolibrary.org/obo/CAMO_0000015>)
 
 # Class: <http://purl.obolibrary.org/obo/CAMO_0000017> (Healthcare Asserted)
 
+AnnotationAssertion(dcterms:description <http://purl.obolibrary.org/obo/CAMO_0000017> "Assertion documented by a healthcare system or provider.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CAMO_0000017> "Healthcare Asserted"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/CAMO_0000017> <http://purl.obolibrary.org/obo/CAMO_0000015>)
 
 # Class: <http://purl.obolibrary.org/obo/CAMO_0000018> (Participant or Representative Asserted)
 
+AnnotationAssertion(dcterms:description <http://purl.obolibrary.org/obo/CAMO_0000018> "Assertion made by a study participant, their representative, or some combination.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CAMO_0000018> "Participant or Representative Asserted"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/CAMO_0000018> <http://purl.obolibrary.org/obo/CAMO_0000015>)
 
 # Class: <http://purl.obolibrary.org/obo/CAMO_0000019> (Participant Asserted)
 
+AnnotationAssertion(dcterms:description <http://purl.obolibrary.org/obo/CAMO_0000019> "Assertion made by a study participant.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CAMO_0000019> "Participant Asserted"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/CAMO_0000019> <http://purl.obolibrary.org/obo/CAMO_0000018>)
 
 # Class: <http://purl.obolibrary.org/obo/CAMO_0000020> (Representative Asserted)
 
+AnnotationAssertion(dcterms:description <http://purl.obolibrary.org/obo/CAMO_0000020> "Assertion made by a study participant's representative or representatives.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CAMO_0000020> "Representative Asserted"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/CAMO_0000020> <http://purl.obolibrary.org/obo/CAMO_0000018>)
 
 # Class: <http://purl.obolibrary.org/obo/CAMO_0000021> (Caregiver Asserted)
 
+AnnotationAssertion(dcterms:description <http://purl.obolibrary.org/obo/CAMO_0000021> "Assertion made by a study participant's caregiver or caregivers.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CAMO_0000021> "Caregiver Asserted"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/CAMO_0000021> <http://purl.obolibrary.org/obo/CAMO_0000020>)
 
@@ -221,6 +232,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/CAMO_0000027> <http://purl.obolibrary
 
 # Class: <http://purl.obolibrary.org/obo/CAMO_0000028> (Group)
 
+AnnotationAssertion(dcterms:description <http://purl.obolibrary.org/obo/CAMO_0000028> "A group of entities or things being assessed as a whole.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CAMO_0000028> "Group"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/CAMO_0000028> <http://purl.obolibrary.org/obo/CAMO_0000023>)
 

src/ontology/camo-idranges.owl

@@ -33,7 +33,7 @@ AnnotationProperty: allocatedto:
 Datatype: idrange:1
 
     Annotations: 
-        allocatedto: "ONTOLOGY-CREATOR"
+        allocatedto: "Robert Carroll"
 
     EquivalentTo: 
         xsd:integer[>= 0 , <= 999999]

src/ontology/camo-odk.yaml

@@ -19,6 +19,8 @@ export_formats:
 import_group:
   products:
     - id: ms
+      module_type: slme
+      module_type_slme: STAR
 robot_java_args: '-Xmx8G'
 documentation:
   documentation_system: mkdocs

src/ontology/catalog-v001.xml

@@ -1,6 +1,6 @@
-<?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
+<?xml version='1.0' encoding='UTF-8'?>
+<catalog xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog" prefer="public">
   <group id="odk-managed-catalog" prefer="public">
-    <uri name="http://purl.obolibrary.org/obo/camo/imports/ms_import.owl" uri="imports/ms_import.owl"/>
+    <uri name="http://purl.obolibrary.org/obo/camo/imports/ms_import.owl" uri="imports/ms_import.owl" />
   </group>
 </catalog>

src/ontology/imports/ms_import.owl

@@ -7,34 +7,16 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/camo/imports/ms_import.owl>
-<http://purl.obolibrary.org/obo/camo/releases/2026-08-17/imports/ms_import.owl>
+<http://purl.obolibrary.org/obo/camo/releases/2026-08-18/imports/ms_import.owl>
 Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/ms/4.1.257/ms.owl>)
-Annotation(owl:versionInfo "2026-08-17")
+Annotation(owl:versionInfo "2026-08-18")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/MS_1000561>))
 Declaration(Class(<http://purl.obolibrary.org/obo/MS_1000568>))
 Declaration(Class(<http://purl.obolibrary.org/obo/MS_1000569>))
 Declaration(Class(<http://purl.obolibrary.org/obo/MS_1003151>))
-Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000050>))
-Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/ms#has_value_type>))
-Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000115>))
 Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/source>))
 
-############################
-#   Object Properties
-############################
-
-# Object Property: <http://purl.obolibrary.org/obo/BFO_0000050> (part_of)
-
-AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/BFO_0000050> "part_of")
-TransitiveObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000050>)
-
-# Object Property: <http://purl.obolibrary.org/obo/ms#has_value_type> (has value type)
-
-AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ms#has_value_type> "'Entity A' has value type 'Entity B', such as xsd:float.")
-AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ms#has_value_type> "has value type")
-
-
 
 ############################
 #   Classes