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feat(Summary workflow): additional annotation dependent metrics
enhancementNew feature or requestNew feature or requestlow priorityNot important at the momentNot important at the momentStatus: Open.#468 In iRNA-COSI/APAeval;- Status: Open.#467 In iRNA-COSI/APAeval;
feat(Summary workflow): check that PAS are reported as single nucleotide in input bed
enhancementNew feature or requestNew feature or requestStatus: Open.#458 In iRNA-COSI/APAeval;feat(Execution workflows / Utils): making RefSeq annotations work for QAPA and PAQR.
blockedSomething prevents progressSomething prevents progressenhancementNew feature or requestNew feature or requestStatus: Open.#457 In iRNA-COSI/APAeval;chore: remove unnecessary requirement in identification swf
low priorityNot important at the momentNot important at the momentStatus: Open.#456 In iRNA-COSI/APAeval;refactor: Singularity from conda environment might cause errors
low priorityNot important at the momentNot important at the momentStatus: Open.#418 In iRNA-COSI/APAeval;feat(Execution workflow): LABRAT feature to reuse previous makeTFfasta output
enhancementNew feature or requestNew feature or requestlow priorityNot important at the momentNot important at the momentStatus: Open.#406 In iRNA-COSI/APAeval;fix(Summary workflows): don't overwrite previous results on new run
bugSomething isn't workingSomething isn't workinglow priorityNot important at the momentNot important at the momentStatus: Open.#400 In iRNA-COSI/APAeval;docs(Summary Workflows): Logging
documentationImprovements or additions to documentationImprovements or additions to documentationgood first issueGood for newcomersGood for newcomerslow priorityNot important at the momentNot important at the momentStatus: Open.#394 In iRNA-COSI/APAeval;- Status: Open.#388 In iRNA-COSI/APAeval;
docs(Execution workflow): update output file specifications for reporting region-level 'polyA site usage scores'
documentationImprovements or additions to documentationImprovements or additions to documentationStatus: Open.#380 In iRNA-COSI/APAeval;feat(Summary workflows): new SWF for relative usage quantification
metaMeta issue (spawns or lists dependent issues)Meta issue (spawns or lists dependent issues)Status: Open.#371 In iRNA-COSI/APAeval;