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STAMP v0.13.1 release - #68
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- Modified utils/io.py to add utility functions for reading/writing MRC files. - Modified tests/unit/test_utils.py to add unit tests for new MRC handling utilities.
- Modified classify/extract.py to update direct mrcfile.mmap call to use open_mrc utility. - Modified filter/render.py to update direct mrcfile.open/mmap calls to use open_mrc utility. - Modified run/orchestrate.py to update direct mrcfile.open call to use open_mrc utility. - Modified utils/io.py to update direct mrcfile.open call to use open_mrc utility.
- Modified classify/extract.py to update direct mrcfile.open calls to use read_mrc utility. - Modified decoy/generate.py to update direct mrcfile.open calls to use read_mrc utility. - Modified picking/native.py to update direct mrcfile.open calls to use read_mrc utility. - Modified picking/vesicles.py to update direct mrcfile.open call to use read_mrc utility and to use STAMP error class instead of ValueError. - Modified commands/pick.py to update direct mrcfile.open call to use read_mrc utility. - Modified commands/identify.py to update direct mrcfile.open call to use open_mrc utility. - Modified commands/refine.py to update direct mrcfile.open calls to use read_mrc utility. - Modified utils/plotting/picks.py to update direct mrcfile.open calls to use read_mrc utility. - Modified tests/unit/test_picking.py to update expected error typer for vesicle label shape mismatches.
- Modified classify/average.py to update MRC file creation to use new utility. - Modified classify/extract.py to update MRC file creation to use new utility. - Modified decoy/generate.py to update MRC file creation to use new utility. - Modified commands/refine.py to update MRC file creation to use new utility, and to update globbing to use new utility. - Modified commands/classify.py to update globbing to use new utility. - Modified commands/plot.py to update globbing to use new utility. - Modified commands/decoy.py to update globbing to use new utility. - Modified commands/pick.py to update globbing to use new utility. - Modified commands/identify.py to update globbing to use new utility. - Modified filter/state.py to update globbing to use new utility. - Modified run/orchestrate.py to update globbing to use new utility. - Modified utils/io.py to update globbing to use new utility.
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