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download.py fetches the xsmall subset (100 um cube, ~8 MB, BSD 3-Clause) of the Stellaromics/demo Hugging Face dataset; to_zarr.py converts it with the experimental spatialdata_io pyxa reader.
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pyxa_v1_io/for the experimental Stellaromics Pyxa reader proposed in scverse/spatialdata-io#425.download.pyfetches thexsmall/subset of the Stellaromics/demo Hugging Face dataset (BSD 3-Clause) intodata/, and extracts the zipped OME-Zarr DAPI mosaic.xsmall/is a 100 × 100 × 100 µm cube, about 8 MB, and the same data the reader's CI tests use.to_zarr.pyconverts it withspatialdata_io.experimental.pyxa(), writesdata.zarrand reads it back.ckmah/spatialdata-io@pyxa-readerdependency as PEP 723 inline metadata, souv run pyxa_v1_io/to_zarr.pyworks.Both scripts were run locally; the conversion reads back the mosaic (all 5 levels), transcripts, both shapes elements and the table.