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gbouras13
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plassembler
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Migrate poetry to pixi
- #85
#85
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gbouras13
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Jul 7, 2026
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Migrate poetry to pixi
#85
gbouras13
merged 16 commits into
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gbouras13/plassembler:main
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migrate-poetry-to-pixi
gbouras13/plassembler:migrate-poetry-to-pixi
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Commits on Jun 15, 2026
fix: robustly parse `unicycler --version` (TERM-unset / tput noise)
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Commits on Jun 16, 2026
ci: add pip to build/environment.yaml
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fix formatting
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remove blank first row of FASTA in error
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fix: validate_fasta handles Biopython >=1.85 strict FASTA parser
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Commits on Jul 5, 2026
build: migrate from Poetry to Pixi
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chore: bump version to 1.8.3
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test: add fast/slow split, golden helpers, and deterministic + validation tests
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fix: correct flye-directory validation and remove dead code
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Commits on Jul 6, 2026
fix: harden collate_depths copy-number calculation
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fix: close file handles and harden read-extraction / chopper
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docs: correct fake-chromosome comment (3 million, not 5 million)
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fix: keep plasmid copy-number column float-typed (fixes --no_chromosome)
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test: run db-download and plass_class depth tests in temp dirs
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test: run external-command tests in temp dirs
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test: isolate qc and assembler tests in temp dirs
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