Quickstart

[martin5555555555]

Addressing the #39 issue

Not too much changes.

• Data in the docs for the quickstart has been shorten to 4 cell types, and we kept the whole bed file
• Azimuth 2023 gmt needs to stay explicit on github if we want that version to work
• Minimal quickstart.smk rule
• Update in Readme
• Update in the docs rule to load the quickstart output image to the right location (right now defined as docs/quickstart/hematopoietic.png)

potential issue :

• There seem to be a new version of snakemake that requires the mem requirements in the configs to be int and not strings. I changed a couple of them in MrBiomics, but we might want to do it as well for all other MrBiomics modules.

• The quickstart only works if we load the main branch of Enrichment analysis and not the stable version (if we want the same plot). This will be adressed with the version change of enrichment analysis.

• The quickstart has been tested and runs, but it takes some time due to the conda env install (approx 15mn)