Fix README and action

.github/workflows/ci.yaml

@@ -8,57 +8,39 @@ on:
 
 jobs:
   precommit:
-    name: Pre-commit checks
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v3
       - uses: actions/setup-python@v3
       - uses: pre-commit/action@v3.0.0
 
-  build:
-    runs-on: ubuntu-latest
-    needs:
-      - precommit
-    strategy:
-      matrix:
-        python-version: [ 3.12 ]
-    steps:
-    - uses: actions/checkout@v3
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v3
-      with:
-        python-version: ${{ matrix.python-version }}
-    - name: Install dependencies
-      run: |
-        pip install hatch
-    - name: Build package
-      run: |
-        hatch build
-
   lints:
     runs-on: ubuntu-latest
     needs:
       - precommit
     strategy:
       matrix:
-        python-version: [ 3.12 ]
+        python-version: [ 3.12, 3.13 ]
     steps:
       - uses: actions/checkout@v3
       - name: Set up Python ${{ matrix.python-version }}
         uses: actions/setup-python@v3
         with:
           python-version: ${{ matrix.python-version }}
+      - uses: astral-sh/setup-uv@v5
+        with:
+          version: "latest"
       - name: Install dependencies
         run: |
-          pip install hatch
+          uv sync --all-groups
       - name: Run lints
         run: |
-          hatch run test:lint
+          make lints
 
   tests:
     runs-on: ubuntu-latest
     needs:
-      - precommit
+      - lints
     strategy:
       matrix:
         python-version: [ 3.12, 3.13 ]
@@ -68,15 +50,15 @@ jobs:
         uses: actions/setup-python@v3
         with:
           python-version: ${{ matrix.python-version }}
+      - uses: astral-sh/setup-uv@v5
+        with:
+          version: "latest"
       - name: Install dependencies
         run: |
-          pip install hatch
-      - name: Build package
-        run: |
-          pip install jaxlib jax
+          uv sync
       - name: Run tests
         run: |
-          hatch run test:test
+          make tests
       - name: Upload coverage reports to Codecov
         uses: codecov/codecov-action@v3
         env:

.github/workflows/examples.yaml

@@ -26,16 +26,15 @@ jobs:
         uses: actions/setup-python@v3
         with:
           python-version: ${{ matrix.python-version }}
+      - uses: astral-sh/setup-uv@v5
+        with:
+          version: "latest"
       - name: Install dependencies
         run: |
-          pip install hatch matplotlib
-      - name: Build package
-        run: |
-          pip install jaxlib jax
-          pip install .
+          uv sync --all-groups
       - name: Run tests
         run: |
-            python examples/autoregressive_inference_surjection.py --n-iter 10
-            python examples/conditional_density_estimation.py --n-iter 10 --model coupling
-            python examples/conditional_density_estimation.py --n-iter 10 --model autoregressive
-            python examples/coupling_inference_surjection.py --n-iter 10
+            uv run python examples/autoregressive_inference_surjection.py --n-iter 10
+            uv run python examples/conditional_density_estimation.py --n-iter 10 --model coupling
+            uv run python examples/conditional_density_estimation.py --n-iter 10 --model autoregressive
+            uv run python examples/coupling_inference_surjection.py --n-iter 10

.github/workflows/release.yaml

@@ -10,7 +10,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [3.12, 3.13]
+        python-version: [3.12]
     steps:
     - uses: actions/checkout@v2
     - name: Set up Python ${{ matrix.python-version }}

README.md

@@ -92,14 +92,6 @@ In order to contribute:
 6) Test it by calling `make tests`, `make lints` and `make format` on the (Unix) command line.
 7) Submit a PR 🙂.
 
-   ```shell
-   pre-commit install
-   gitlint install-hook
-   ```
-6) Implement your contribution and ideally a test case.
-7) Test it by calling `make format`, `make lints` and `make tests` on the (Unix) command line.
-8) Submit a PR 🙂.
-
 ## Citing Surjectors
 
 If you find our work relevant to your research, please consider citing:

pyproject.toml

@@ -78,7 +78,7 @@ show_error_codes = true
 no_implicit_optional = true
 
 [tool.pytest.ini_options]
-addopts = ["-v", "--doctest-modules", "--cov=./surjectors", "--cov-report=xml"]
+addopts = ["-v", "--cov=./surjectors", "--cov-report=xml"]
 testpaths = [
     "surjectors"
 ]