Ax_SCFM2_RNA_Seq

In this folder is the code for my RNAseq workflow for comparing Achromobacter xylosoxidans (Ax) grown in synthetic artificial sputum media (SCFM2) to Ax grown in LB.

Name		Name	Last commit message	Last commit date
Ax_DESeq2 (1).R		Ax_DESeq2 (1).R
Ax_PCA.R		Ax_PCA.R
Ax_clusterProfiler (1).R		Ax_clusterProfiler (1).R
Heatmap_annot (1).R		Heatmap_annot (1).R
NH44784_makeStarIndex (1).sh		NH44784_makeStarIndex (1).sh
README.md		README.md
alignment (1).sh		alignment (1).sh
trimming (1).sh		trimming (1).sh

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